Array 1 80990-81263 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQH01000003.1 Bifidobacterium adolescentis strain MCC258 NODE_4_length_81183_cov_116.898415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80990 29 100.0 32 ............................. GCCGATGCCGGGCTGGCCAGCTTCATCGACCC 81051 29 100.0 32 ............................. CAATCAACTTGAGCGGATCATCCCAATCCGCA 81112 29 100.0 33 ............................. CTCAGATCAGAGTTGTGCTCGTTGTGAGGAAGG 81174 29 100.0 32 ............................. GGCAAGGTCCCCATCATCGGAAGGATTGACTA 81235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TTGGGCTTTGGGATGATAAGCAGGGCGAGGTTTCTGCAGGCAAGTCCTACTCGGATAATGACGAATGGGATGGTGGGACATGGTAGTGATTGTGCTGACTGCTTGTCCTGTGGGATTGCGGGGTGATCTCACTCGTTGGTTGCTTGAGATAGCCCCAGGAGTTTTTGTGGGACATATCGATGCTCGAATTCGAGATAGGTTATGGGAGAGAATCATTGATTTGCTCAGGGATGGTCGTGCCGTAATGGTTTATTCGGCCAGAAATGAGCAGCATATGGCTTTTAAGGTGTATGGGGCTGACTGGTCACCGGTCGATTGCGATGGATTGCAATTGATCAAACGTCCTAAGGAAGCAAAAGAAGGATCCTTTGTTGGCACTCCTAGAAAAGGATGGAGCAATGCGAGCAAATACCGAAAGGCAAGGAAATTTTCAAAACGAAACTGAATGAAAAACAGCCAGTTGTCCTTTCTTTTCCTTGGAATTATGCTATTTTCGAAGT # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-1366 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQH01000005.1 Bifidobacterium adolescentis strain MCC258 NODE_6_length_1286_cov_63.969673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. GGACGGTCCTGCTGGTCGAGCGCGACCAGCAC 119 29 100.0 32 ............................. TGCACGCTGCCGCAGTTGCGGTTGGCGACGAT 180 29 96.6 32 .......................A..... ACGCGAACCTCAGCCGCCCACTGACCTTGAGC 241 29 100.0 32 ............................. TGTTCTGCAATGCGCCGAAGGACGCGTTGAAT 302 29 100.0 32 ............................. GTGTCGCGTGGCGATCTTGTGCAGGTGGTGTC 363 29 100.0 32 ............................. GCCGAGACCATCAAGAAGGCCATGAACGACAG 424 29 100.0 31 ............................. CAGCTGGGTGTGGTCCGGACGAGACAGCATG 484 29 100.0 32 ............................. GTCGCGGACATGTCATCAATCCATTCATCGAA 545 29 100.0 32 ............................. ACCGGCCTGTACGCGTCCGGCTGCTGGTTGTC 606 29 96.6 32 ..........T.................. CCCACAGGCGGGGACAATCAAGGTTCGGACGT 667 29 100.0 32 ............................. GTACACCTGCGTTTTCTCGCCGGTCATGGCAT 728 29 100.0 32 ............................. AAGGTAGGATTGTTGTAGTTGTTGACACCCCC 789 29 100.0 32 ............................. GTCGCCCTTGCTTGCCAGTGGTCGAATATCGG 850 29 100.0 32 ............................. GGAATGTCCGCAATAAGGGCAGGACCAGACGA 911 29 100.0 32 ............................. CGCAACGTGCCGACGCAGAAGGCCATGGACTT 972 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCGGCCGACT 1033 29 100.0 32 ............................. ACATGGCTCCGCGACCAGTGGGAGACATGGGC 1094 29 100.0 32 ............................. GGTAGCGGAACCGCTAGCGAAACGTCTGGCAA 1155 29 100.0 32 ............................. TTGGCTCCCTGGATGGTCTTGTTGCCGTCGGC 1216 29 100.0 32 ............................. TGGTCGTTGCCCTTGGCGTTGTGTTTGACGGA 1277 29 100.0 32 ............................. TGATCGAGGAACGCCGCAAAGTCTCCCAGCTC 1338 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TCCCCGCACATGCGGGGATGATCCCCCGACGTGCACCTCGAGGTCGCCGGCGTCAAAG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1065 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQH01000017.1 Bifidobacterium adolescentis strain MCC258 NODE_19_length_985_cov_73.131981, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ATTGGGTCGGATTCCGGGTTGTCGGGGTCGAC 62 29 100.0 32 ............................. CGTCCCAGGCGGTTCCGATCGCCATCGACCAG 123 29 100.0 32 ............................. TGCGCGGATCCGATGCCGTTGCCGCTGAAGCA 184 29 100.0 32 ............................. CAGTGGACAGTGCAACACAATACCTTGTATGA 245 29 100.0 32 ............................. AGTACGGCGTTGGCGAACGGATTAGGGGTAAT 306 29 100.0 32 ............................. CAACCAGGGATCCAGCCGCGCCTACCCGGTCT 367 29 100.0 32 ............................. ACTTCCCGAGGGATTTTCATCTCGTTCAAGGC 428 29 100.0 32 ............................. AGTGCCGTCCTTGGATCCCGAACGCCCCTTTG 489 29 100.0 31 ............................. CATGAGTAAGGAAACACTCGAACCGCCACGC 549 29 100.0 32 ............................. TGCTCACCGGCGAATTGATGGATATTAAAGCT 610 29 100.0 32 ............................. GCTTTGGCCTCGCAGTTCGGCCATGAGGTGCG 671 29 100.0 32 ............................. GATAGCCTGATACGTGCCCTCTTGGTCTGAAA 732 29 100.0 32 ............................. GTTCATCATCGGCACCGTCGCTTTCGTGATGG 793 29 100.0 32 ............................. ACGATCGCGGGCATCAACGCGCAGGTGCAGCA 854 29 100.0 32 ............................. TGCACGATGGCGAAATACGGCCTGCCGGTACG 915 29 100.0 32 ............................. CATTGGACGCGCACAATCTTACCCAAGTCGGT 976 29 100.0 32 ............................. CGATTACGGTGGTCAGAAACAGCTGTTCGACA 1037 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQH01000002.1 Bifidobacterium adolescentis strain MCC258 NODE_3_length_197304_cov_107.291603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 2 29 100.0 32 ............................. TTGTGACTTTGGCCGAAGCTGCTACCCCGGTT 63 29 100.0 32 ............................. GACAAGGTGGTCTACGAATTCGCCACGAAACT 124 29 100.0 32 ............................. CGTGCTCAAGCCTTGCAGAAAGTCTTGCACAA 185 29 100.0 32 ............................. GTCGAGATCTTGCATGATTGGCAGCAGATTCT 246 29 100.0 32 ............................. CGGCTGTGGCCGCAGATGGCCGACTCGGGCAA 307 29 100.0 32 ............................. GAAACCGTCCAAAAAAACGGTGGCAAAACAAC 368 29 100.0 32 ............................. ACATCCCAGTCCAATTGTGGCCGATGGATGTA 429 29 100.0 32 ............................. AACGGCCCGTGCGAAAGCCTCGAAGCGTTCTG 490 29 100.0 32 ............................. CAACCATCTACAGGGACATTGTAACTGGCTCA 551 29 100.0 32 ............................. GTCTTACCGAGACCACGCGCACTGATAATGAA 612 29 100.0 32 ............................. ACGGATAACAACGGCGATATGGTAACGGTGCT 673 29 93.1 32 ...T.........G............... ACTTAAATTTGGACGTCAGGCGCCCAGATTGT 734 29 89.7 166 ...T......T.....T............ AACGGCACGAAACACATATCCGCGAGTTATGGGTGCTCGACATATCGGGACTGCATCAGATCCAACTGAAATAGAAAGCCCGAAGATAACCCCCCGACTGATGTTCCAGTCTTGAAAGCTGGTCGCGTGGGATCTTCGAGCAATCCAATTCTACCACCACGGCACC T [761] 930 29 89.7 32 ...T...............A....G.... CACGACATGCAGGACTACCAGCCACTCGGCAG 991 28 93.1 32 ...-.......G................. GCGCTCGAAAACAAGCTGCGCCAGCGTTTCAA T [999] 1052 29 86.2 0 ...T......................TGT | ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 16 29 97.0 41 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : CG # Right flank : TATTTGTCAATCTATCAGTCGCATCGCATGTGCGTTAGCTACACTTATCCGCATAAGTGTAGCTAACGTTAAAATAAGCTACATTTATCTCGATAAGTGTTGCTTACGAGAGTTTTTGCGATGGATAATAATTTCGGCCATTTCGATATACATGAATCCGTAGGGGCCACAACGACTTGTGTTTCCGATTTACAAGCGTGGCTTTGCTTAAGAACGTGATTTTGTCCGGGGAACGATGCGCTTGACACATACTGGCACTACCAACGGAGGAGCACCATGAAATACGAGATTGCGATTTGCAAAAGTATGAAACGTAAGAAAGGACGCAGTCGCGCTTCGATATGTTTTTGATTGCGTAACGGCGCGACGGCATCGCTTTTGCGCATGTCGGGCGCTTCGTTGCCGCAACCGGCGTAAGATATCTGCGAATGTCAAACATAAGCGAGATATCTGAAGGAGAGAAGATGTCAACAAACGAAGCAGCATTGCCGCAGTCGACG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //