Array 1 8942-7389 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWO01000038.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5131 NODE_38_length_14367_cov_100.260757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8941 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 8880 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 8819 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 8758 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 8697 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 8636 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 8575 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 8514 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8453 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 8392 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8331 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8270 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8209 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8148 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8087 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 8026 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 7965 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7904 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7843 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7782 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7721 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7660 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7599 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7538 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7477 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7416 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8933-9450 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWO01000008.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5131 NODE_8_length_226294_cov_100.257373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8933 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8994 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 9055 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 9116 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 9177 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 9238 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 9299 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 9360 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9421 29 93.1 0 ............TC............... | A [9448] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //