Array 1 123076-121190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMST010000009.1 Phocaeicola massiliensis strain D31t1_170403_E10 NODE_9_length_135931_cov_22.7878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 123075 47 97.9 29 A.............................................. TTGCTTTTACCGGTCATAGAACGATACGA 122999 47 100.0 30 ............................................... ACTTTTCAAGCAATTAATATTATGTTACAA 122922 47 100.0 30 ............................................... AGTATCCATTCTCCATAATTATCCGGCAGA 122845 47 100.0 30 ............................................... CTTTGTTGGTCGCAATTTTGCTTCAGCCGA 122768 47 100.0 30 ............................................... TTATAATCGGTAACAGTATCTATCACCGTT 122691 47 100.0 30 ............................................... GCTGGGGTATGGCGTAGTCGTAGGGCTTTT 122614 47 100.0 30 ............................................... CGATAACCATCTGCTTGTTTTGCTCGTTTT 122537 47 100.0 30 ............................................... TGATTCTCACACCCATCCGGACATATTACT 122460 47 100.0 30 ............................................... TACCACTTTAGTGAAACGAGTTCATACGTG 122383 47 100.0 29 ............................................... AGGACTTGATATGGCAAAGGTAAAGTTTC 122307 47 100.0 29 ............................................... TCCTACAGTCGGGCCTCTATTCGGAAGTT 122231 47 100.0 29 ............................................... TTCATTATTTTCTTTTTTAATGACTTCTC 122155 47 100.0 29 ............................................... CAATAGCAGCAGAAGCGAATGCAAACTTC 122079 47 100.0 29 ............................................... GCGATGGAGAAGGTCAACCGAACTAGAGG 122003 47 100.0 30 ............................................... ATCCTACTGTCGGTCCTCTATTCGGGAGCT 121926 47 100.0 29 ............................................... TTTTTTTTGATATATGCAAGAGAACACAG 121850 47 100.0 30 ............................................... TAGGACTCGATATGGCAAAGGTAAAATTTC 121773 47 100.0 30 ............................................... ACTGCCCATACGGACATGTCGTCTTCATTA 121696 47 100.0 29 ............................................... GAAAGAACACAAGAGAGTACTACGTGTTC 121620 47 100.0 30 ............................................... GTTCGGGTGTCCGAAAAGCAGACGTAACCG 121543 47 100.0 30 ............................................... TGTGCTGTTTTGGGGGTATATTAAGAATAG 121466 47 100.0 30 ............................................... AGGAGAAGTATTCAAAACCTCGTTTATCCG 121389 47 100.0 30 ............................................... TACTTTCCGATAATAGGAAAGAGACCCTTC 121312 47 100.0 29 ............................................... TGATGTATGGTTTGACTATGAACTGATTT 121236 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAGC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : TGAATATATATTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //