Array 1 23994-23493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFY01000018.1 Lactobacillus helveticus strain IMAU50024 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23993 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 23927 32 100.0 36 ................................ GCCTTCCTTGACCACATGTGCTTGACAGCCGGTATA 23859 32 100.0 36 ................................ GCCTTCCTTGACCACATGTGCTTGACAGCCGGTATA 23791 32 100.0 35 ................................ CAAAAGAACCAGTTCACGTGCCAACAGGTAAGTAA 23724 32 100.0 35 ................................ ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 23657 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 23590 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 23524 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 25565-24597 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFY01000018.1 Lactobacillus helveticus strain IMAU50024 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25564 32 100.0 34 ................................ ATTAAATCACCTCACATATATTATATACGTATTT 25498 32 100.0 35 ................................ AACATACTAAATGGGGAACACGTAAATTTTGGTTA 25431 32 100.0 34 ................................ ATAGGTGAAGCTATTGCACACAAGCATAGATCAC 25365 32 100.0 35 ................................ TTTCTATCATGAGCTTCTGTGAAGTACCAGCAATG 25298 32 100.0 35 ................................ TTTCTTACTTGCAGTGGAAGAGCCACCACTTGTAG 25231 32 100.0 35 ................................ AATGTGTGATGCATCCAAAATAGGGATATGAGCTT 25164 32 100.0 36 ................................ AAATATGACAAGGACGGTAAGTTAGTTACCGATGAA 25096 32 100.0 35 ................................ ATTAAATGGGCACCAAAATCAGTTTCTAATTTTTG 25029 32 100.0 35 ................................ ATTAAATGGGCACCAAAATCAGTTTCTAATTTTTG 24962 32 100.0 35 ................................ ACGATAAAAAGCACCAGTTGCCTTATCGGTTTTCT 24895 32 100.0 35 ................................ CTTAAGTTCGCCCTTTTTGATAAGGGATGAAACTC 24828 32 100.0 35 ................................ CTTAAGTTCGCCCTTTTTGATAAGGGATGAAACTC 24761 32 100.0 34 ................................ TATGGATGTCTTGAAGTTGAGCATTTCTTAATCT 24695 32 100.0 35 ................................ TCTTTGTTCCTGCATTTGATTAAGGATTTGATTGC 24628 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : ACTTAACAGATGATGCAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3069-2857 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFY01000058.1 Lactobacillus helveticus strain IMAU50024 Scaffold58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3068 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 3007 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 2946 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 2885 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGTATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : CAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //