Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMC01000001.1 Listeria monocytogenes strain 33868 NODE_1_length_744499_cov_93.1993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8126-5379 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMC01000003.1 Listeria monocytogenes strain 33868 NODE_3_length_378293_cov_121.579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8125 36 100.0 30 .................................... GTGTCACTGCGCCAACAATCTCTTGTTCCG 8059 36 100.0 30 .................................... CTGTGCCTCTTGAGATACAGACAACAAGAA 7993 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7927 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7861 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7795 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7729 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7663 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7597 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7531 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7465 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7399 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7333 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7267 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7201 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7134 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7068 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7002 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6936 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6870 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6804 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6738 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6672 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6606 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6540 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6474 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6408 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6342 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6276 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6210 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6144 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6078 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6012 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5946 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5880 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5814 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5748 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5682 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5615 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5549 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5483 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5417 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5382,5385,5390] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //