Array 1 12652-15262 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYX01000013.1 Lactobacillus jensenii strain UMB4707 NODE_13_length_43691_cov_27.347626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12652 36 100.0 30 .................................... TTCAAGCCGGAGCGGATACAAGCGCAGTTA 12718 36 100.0 30 .................................... ACAAGAAACCAAGTTAGTTAACAAAGTTTT 12784 36 100.0 31 .................................... TGCAGAATTGGTCACTGTATAAATTCATCGG 12851 36 100.0 30 .................................... GCCTGAAAGTGATACATAGTACTTACCAGC 12917 36 100.0 30 .................................... TAAAACTATTATGAAAATTGCTTCAGTAAT 12983 36 100.0 30 .................................... TTCTAACTATCCGCTTAGCGTTACTGTAGT 13049 36 100.0 30 .................................... CTTTCGATGGCTTGCTGCTCTTATCCCGCA 13115 36 100.0 30 .................................... TTTAATCATTTTAATGATTCCGTCGTCCAA 13181 36 100.0 30 .................................... AGTTTTGGAAAAAATAGGAGGTTTAAACTA 13247 36 100.0 30 .................................... TTGGTTCGAAAAACGTTTTGCAACGTTATA 13313 36 100.0 30 .................................... TTGATTGACTCCACTCGTTTGCCCAGACGC 13379 36 100.0 30 .................................... CTTTCAAACCTCTTTTAGCCTGTGGAAGAT 13445 36 100.0 30 .................................... CTCAGATGAAGAAGACAAAGACAAGAATGC 13511 36 100.0 30 .................................... AAAGTGGAATTTCAGTTGGACTCTTTACAT 13577 36 100.0 30 .................................... ATACCGTGGAGATTTGATTAACTGGTATAC 13643 36 100.0 30 .................................... GAGTAGCCTGCTTAGTGCAATCACTGTATC 13709 36 100.0 30 .................................... CTTATTGTGCTTTTTGAAGTAGTCAGCATC 13775 36 100.0 30 .................................... AGGTGTTTTCCCAGAATTAGACCTTGATGA 13841 36 100.0 30 .................................... TGTCATGTAAGCACCGTGCTTTCTGATAGC 13907 36 100.0 30 .................................... TGTCATGTAAGCACCGTGCTTTCTGATAGC 13973 36 100.0 30 .................................... TGGACATATTGTTGCTTTTAAAGCTGATAT 14039 36 100.0 30 .................................... AGACGGTGTAATTGCTAGTTGTGAAGAGGT 14105 36 100.0 30 .................................... TAGAATATCGTCCTTGTTGCTTTGGTTTAA 14171 36 100.0 30 .................................... TCGTTTTAGCTCTTTCAGGTAGTAACTCAT 14237 36 100.0 30 .................................... AGAATACATACGGCTCATCAATAATAGAAA 14303 36 100.0 30 .................................... ACTAGCAAAAGAATTTACTACTATCACTAT 14369 36 100.0 30 .................................... TTCATCTACTATGAAAAGCTTTGCTTCATA 14435 36 100.0 30 .................................... TAATAATGTAAGCTAATTAATAAGAAAACG 14501 36 100.0 30 .................................... AAGGTATTGATTTACCAGATATTATCGATA 14567 36 100.0 30 .................................... TTTCATTCTTTAAATCTTTCAAGCTAGTGA 14633 36 100.0 30 .................................... GAGTGTACTGTTGCAAACCTCGACTAGCAT 14699 36 100.0 30 .................................... AACGTACGGCTTAACTTACTGCTTAACTTA 14765 36 100.0 30 .................................... TGGAGCTGGTGGGTTCGGAGCAGGAGGCTC 14831 36 100.0 30 .................................... TTAACCGACAAGCGGAACCCAAAGAACAAC 14897 36 100.0 30 .................................... TCGTTTTAGCTCTTTCAGGTAGTAACTCAT 14963 36 100.0 30 .................................... AGAATACATACGGCTCATCAATAATAGAAA 15029 36 100.0 30 .................................... ACTAGCAAAAGAATTTACTACTATCACTAT 15095 36 100.0 30 .................................... AGCGCCTAAAAGAGCTGCAGTAATTTCAAT 15161 36 100.0 30 .................................... TAAAAGTTGCTTTTTCTTTGATAAAGCCTG 15227 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAAGATTGTCTTAATTCTTATCTAACTAAAATTATTTCAAATTTATTTGAGAATATAAGTGAAAAGCATCGGAATAGAATATTTGATAAATGGAGGCAACTTAGCACCGATATTCAAGATATAATCTTTATGACTGACTTACCAATTGAAGTCAATGAAAATGTAGATTTAAAAAAGTTATTTAAATTTGATGGAATTCATTTTGATGATTCTGTACTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAATGTAAGTCATTATCTTACAAAAGAACAACTGAATAACTTAATTACCTTTGTAAAAGAAGTAAATGTACCTTTGATATTAATGGAATTTTCATCTCCGAATTTTAAGGTTGTTAGTGGGGATTCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTACAATCTGAGAAGCTGATGATAAAACGTCG # Right flank : CTGTTAAATTTAAAACTACGTATAACAAAAAGTTTTAGAAGGTTGTAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGTATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATATGTTTTTAAAAGTTAGGAATTATCAATTTAACTCTGTATTGACTATAATTATTTTGAATGATAGCATAGCAAGAAGGGAGCTAAGCCTAGCTCCTAAAAAATTATTATTTAGTCATTTTATAAATTACTAATAGTTGAGTGATTATAATCAGTAATTTAATAACAATGTCTAAGCAGTCTTTTATAACGGCTATTCTATAGCCGTTTTTATTTTTGTGCTTTTTGTTTTAAAAGACTAGCGAATCCATGATTTAACGAACTCCGCTATTTGTATAGCGGAGTTATTTTTTCCTCTCAATTTAATACAAGTACCAAAGAACTTTGAAAATAATAGCAATTGGTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //