Array 1 65990-65308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAP01000025.1 Streptomyces aureocirculatus strain NRRL ISP-5386 contig25.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65989 29 100.0 32 ............................. CTGCACGCCCTGATCAACTCGCGGCTACCGGG 65928 29 100.0 32 ............................. CTCACCGCGGCCGACGCACTCGCCACCCTGCC 65867 29 100.0 32 ............................. GGATCACCACCGTCACCGAACAGCCCACCACG 65806 29 100.0 32 ............................. TTCACGCGTCCTCCTTCGCGGAGATCGTGGCG 65745 29 96.6 31 ............................T GCGCCGCCAGCTCGACTCCACGCAGGCCTCC 65685 29 100.0 33 ............................. AGGGGCGTCCCCGGTTTCGTCACGTGACGAATC 65623 29 100.0 32 ............................. CGGAGCTACCCGAAGTGTAGTTGGGCGACTGG 65562 29 100.0 32 ............................. GGGCCCGCCGCCGCGCTGCTGGTTCGGCACAT 65501 29 100.0 32 ............................. GGCCGGCAGGCGTTCGGGTCCTGAGCGCGGGA 65440 29 100.0 15 ............................. TGGCGCTGCGGGCCG Deletion [65397] 65396 28 82.8 30 ..C.A.T...-..............C... TGGACCAGGACCAGCTCGCCGACCTGGACC 65338 29 82.8 0 ....A......CTG.......A....... | C,C [65328,65335] ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.9 30 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGCACAGAGGAACCGATCTGGTGACGGTCATCGTGCTCGCCAACTGCCCCTCCGGACTCAGAGGGTTCCTCACCCGCTGGCTCCTGGAGATCTCCCCCGGCGTCTTCCTGGGCGCTCCCACAGCTCGCGTACGAGACATCCTGTGGGCAGAAGTACGCCAGTACTCCGGCCAGGGCCGCGCTCTCCTGGCCTACCAAACCGACACCGAACAGGGCTTTGCCTTCAAGACCCACGACCACGCCTGGAACCCGGTGGACCACGAAGGCCTGACCCTGATCCACCGCCCGTCCCCCGCCGCCCCTCACTCCGATGGCAGTCAGCCGTCGCCACCTCGCTCGGGATGGAGCAAGGCGTCGAAGAGACGACGGTTCGGCGGCTGACAACCACAGCACACCTGGGCCTCCCACACAGACATGAAGCCCGATTTATTCCTTATGTCGAAATCTTGCATAGTAAGCAAAAGCGGGCACCCCTGCCCATAGACATGCAGGTCACTCACG # Right flank : GAATGCGTCCGGCGGCAGTCAGGCGCGTACGTCCCGCTGCTGCACCTCCTTGAGGACCGCCGCCACCGTGGCGAAGTCGTTGTCCACGTGGAGCACCGTGTGATCGTGATGGACCGCTGTCGCACACACCAGGAGATCGATGGCTCCGGCGGCACGGTGCTGCCCGTGCTGCCCTTGCTGGGTGAGCTTGTACTGCGCGTTCTCCACCCAGCGCCACGCGTTCTTGGGAACCGGTGAGAAGTGGCAGAGGGCATCCAGCTCTTCGGCCAGCTCGTCGCGGTGGGCCGGGGTGGTGGCCGAGTAGAGGAACTCCGCCCTCGTGGGCTCACAGATATGGAACACGCCCGCGGCGATGTGCCCTTCCCAGGGCCGCAACGCCCCCGGCGTACGAAAGAGATGCCACAGGGCGGAAGTGTCGAGGAGGTAGGTGATCACTCGAAGGCCGTCTGACGGGCCCGCTTGGCAGCCGCATGCGCCGCAGCAGCCGCCTCGAACTCGCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 77613-76302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAP01000025.1 Streptomyces aureocirculatus strain NRRL ISP-5386 contig25.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77612 29 100.0 32 ............................. GTGCGCCTGGGCATCGGCGAGCCCCTCCACAT 77551 29 100.0 32 ............................. GTGTCGTACGACCTCACGTTGCTCGACCGTGA 77490 29 100.0 32 ............................. CATGCTCCGCTGTTCCGGAACTGTCAAGCTGT 77429 29 100.0 32 ............................. CAGGAGAGCGGCGGAAACGCGCGCGCGATCAA 77368 29 100.0 32 ............................. TGGTTGCGCATCGTGTACGTGACCGGCGGGGG 77307 29 100.0 32 ............................. GGAAGATTCGCGCGATCCAGGACCACAATTCA 77246 29 100.0 32 ............................. GGGACTCGGCGCATGGGGACCGTGAACGACGT 77185 29 100.0 32 ............................. CGACGAGAAAAAGCGCTGCATCAAGGGCACTG 77124 29 100.0 32 ............................. GCGCGGCTGACGCTCGGCGCGTACTTGACCGT 77063 29 100.0 32 ............................. CGGTGCCCGGAGGGGACGAGCGGCGAGCAGCC 77002 29 100.0 32 ............................. GAGGAAGGTTGTAGCGACTGACCTGCTACTTT 76941 29 100.0 32 ............................. CGGCAGTCGGTGATGAACCCGTCTGCGGCGCC 76880 29 100.0 33 ............................. AGGACGCAGCCCTGGCACTGGCGCGGCTGGCTG 76818 29 100.0 32 ............................. GACACCGTCGCCAGCATCATCTCCGGCCTGGC 76757 29 100.0 32 ............................. ACCGAGTCCAGCGAGATCAGTACTGCCGGGTG 76696 29 100.0 32 ............................. CTCAGGTAGTGGGTCCCCCCGAACCCCAAATC 76635 29 100.0 32 ............................. CGGGTCGCCGGGGTCGCAGAAGAGCCGATGGC 76574 29 89.7 31 ........................TC..T TTCAGCATCACTGTCAGCACGCTGAACGAAT 76514 29 100.0 32 ............................. GGCTTGTTGGCCGCCGTGGGTCTTGTGGTCCT G [76504] 76452 29 96.6 33 .................A........... GGGATCTACCTCGGCGTAGACACGAACGGGCAC 76390 29 100.0 32 ............................. AGCAACACCTGGTGCTGCGGCATCCCGCCGGT 76329 28 75.9 0 ....C...........-.A....C.G.TT | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.3 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GACAGATTCGCCGACGGATGACTCCCGCTGGTGCAGCGCAGACACCACGAGTTTGCTTGAGGTACTGAGCGAGCTCCGCAGGCATGACGCAGACTCGGCACGCGAGCCTCTCGGCGGACGACTGGGGGCGTGAACGGTCAGCACCTGCGAATCCGCCTCAAGCCCCGCAGGAGCAGGGAACACGCAAATACCAGAGATCCCCAGGGACCACCCCCGCAGACGCGGGGATCGCACACGCACGCCAATCCATCGGCGAGCGGCGCTAGCGAACCTTCGGACAACTACGGCCTGGAACAGCTCTTTTCAGAGTGAGAGGATGCTGGGCCCCCGCCCGCTTCGCAAGTCTCCAAGGTCGTTCTTAGGCTGCACTCTGGGTACCGCAGTATCAAGACGTTCTACTCATGGGCCATGAAATTTGAAGGCAGGTGCCCTAAATGTCGGTTCACATGCTAGTGAGCAAAGTTGACTCCCCCAGACCGTGAACGTGCAGGTTGCACCCT # Right flank : AAAGACTGTTCGGCAGTGCCAACTGGGGATCTATCTGTATTACAGCCGACTTCGTCAAAAGGCTACCCTTCACCGCTCGCCCCGTGTGTACGCTCGCCGCAACCAGCCCTCGCAGCGAGCCCGTTCACGAAATCGGCCGGACCCGTTGCACCTCCCCGTCTCACCGAGGAGGCCGGGCCCGGCCTGTCCCTAACCACCTGACGATCGTAGGAACGCACTCATGATATTACGTTCAAGTCGCAGCTCAGAAGGCCCATCCGGCCCGTTCGTCGCTCTTTACGCTGTGCTCGCGGCGCTCCTAGCAGCCTGCCCGCCCGCACCTTCTCCGTACGCCTCGTGGGTATGGGGTGCCGTCGTGGTCGTGGTCATCGTCCTGGTGATCGCGCAGTCGACGTTGGGCAGCGCTCAGGCCTGACGGAGCTGCCGCGGTCGGCATCCGGTACGCAGGGTGCCGACCGTTCCCGACGTGGTCTTCGACGCGTCCCCAGCGCCTTACTACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //