Array 1 348466-348302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000005.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 348465 32 100.0 33 ................................ CTTTCTTTCTCTCCATCACTAGTAAGATCAAAA 348400 32 100.0 35 ................................ AAGACTGGTTCGAGCGGGTGGGTTGCAACTTCAAC 348333 32 90.6 0 ..........................ATG... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATTCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCACCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGTTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTC # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42339-42174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 42338 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 42272 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 42205 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : CAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 55741-54976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 55740 32 93.8 33 .........T.A.................... AGGTTTTTTGCTATCATTAAATGATTTATATAA 55675 32 93.8 35 .........T.A.................... ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 55608 32 100.0 34 ................................ AACGATTTCCTCTTGATTGATTTTAATAATCATT 55542 32 100.0 34 ................................ TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 55476 32 100.0 34 ................................ ATTAAACAATATATCGTCGGAAATAATGTGGGTT 55410 32 100.0 35 ................................ AAGGCATTGTATAGATCATCTTTAGCGCTCTTGCC 55343 32 93.8 36 .........T.A.................... CTACCTGCATTGCCAAACCCATCAGCCAGCTTGCGT 55275 32 93.8 34 .........T.A.................... GCTCAGGTTCTGTGTCCGTCATGGCGCTTATCAA 55209 32 93.8 35 .........T.A.................... TTATAAACCTAAGAAGTTCCAAACATCTATAGGCA 55142 32 100.0 37 ................................ TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 55073 32 100.0 34 ................................ AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 55007 32 84.4 0 ........TT.A........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 96.1 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TCTCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTAAAGGAGAATGAATAGTCTATAATAACTTGTTTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTATGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTAGGGGGATTTCGCT # Right flank : ACGCTGCTGCCGTAGCAAATGAACTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCAGCAACCAGCGATGGTTATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAGATCGACACCAAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATCG # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 60092-59656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 60091 32 100.0 35 ................................ CGTTGTTGTCGTCGTCGTTGTGGTAGGCAACGTCT 60024 32 100.0 34 ................................ GCTGCGCATCCGGTCAACTATTTCGTGCTGGGCA 59958 32 93.8 35 ..........AT.................... CAAATCTTCTTGGTCTTTGTAATAATTGGAACCAT 59891 32 96.9 36 ...........T.................... ATCTTTGCGGGTATTGCGCCCAGCGCGCCCAGTTAC T [59882] 59822 32 96.9 34 ...........T.................... CAATACGTCATGACTTCCCCTAACACTGGATGGG T [59813] 59754 32 93.8 33 ...........TA................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC G,TT [59730,59744] 59686 31 78.1 0 ...A.....C.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 94.2 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGTTGGTGGATCAAGGGGCGATATTGAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAAAAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATTACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTAACTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : AAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCCGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGGAAAACTTATCGGCTTTCTAATAGGATTCCTTTCTCAATCACATCCAAAGGTAGCCTATATACATTTCGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTTCAT # Questionable array : NO Score: 8.53 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : TCTTTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 70628-69798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 70627 32 100.0 34 ................................ TTTTTAGCCGCGCTTAAATTGACAGTAACTTGCA 70561 32 100.0 36 ................................ CCACTCAAGACGAAAGTAGGTGATAATTTGGGTGAA 70493 32 100.0 35 ................................ CGCGCATAACCAAACAGGGCTGACCGACTGCGCAA 70426 32 100.0 34 ................................ TCTCTAGCGTCCACGGTTGGCATCGTAGTTGCGC 70360 32 100.0 38 ................................ GCGGCAAGTAAATTTAATATCCCCGCGCAAAGCGGATG 70290 32 100.0 34 ................................ GTCAACTTTGTGGTAATTTCTGCATGCTCTTCGT 70224 32 100.0 31 ................................ AGTCTATCGGTAATGCTATCCCTGAAGGTCT 70161 32 100.0 35 ................................ AACCACCCTCTCGACTATTCCTACGTCTTCCAAGT 70094 32 100.0 34 ................................ AAACGCATTGCGTGGTCATTTTGTGCAGGCATAT 70028 32 100.0 33 ................................ TAGGAACTTGGGGAGTGTTGGTATTTTTTCACG 69963 32 100.0 35 ................................ TGGTGAATACGATAATTCAATCTTAGGAGCTTGTA 69896 32 100.0 35 ................................ GCCCTAATGTAGGCTCGCCATTTACCGGATCTTTT 69829 32 87.5 0 ...........C.....C...G...C...... | ========== ====== ====== ====== ================================ ====================================== ================== 13 32 99.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCATCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAAATTCGCT # Right flank : AGAAAGAAATCCACCAATCGATCATTTGTAGAAAAAGTCACCCTCGTTGGGTATGCGTAGATTAAAGTCCCAAAAGACGTCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTGCAACATCCGCTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCCAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTCCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATCCAACAGGAATATCTACACCCTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 71755-71387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 71754 32 100.0 33 ................................ AATGAACAACCTACGCACCGAAGCGAGCCTGCT 71689 32 100.0 35 ................................ TTCGCAGGGTTTTGTTGACACTGTTCCAACTGGCT 71622 32 96.9 37 ........................G....... ATTTTTGAGATCCGCTATTTCTTCTTCTATTCGCAAA 71553 32 96.9 36 ........................G....... AAAAAGCTCAAAGGTGGAAGAACCCTCTGTGTACAG 71485 32 96.9 35 ........................G....... TGCTCTTCCTTCGAGAGTTGTCTATATTCACTTGA 71418 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 98.4 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTGCAAAATTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAGTTAACATCATTAAAACTTGAACTAAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTATCGATTAGGAAACAACTATAAATCGAAAGTGGAGCACATTGGTGCAAAACCGACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGGACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATTAAAATATGTGTTAACGTGTATTAATTTGAAGAAAGATGTTATTGGTTTTAAAGGATTAGAGTAGAATCAATGAAAAACACCTACTTTAAGAGCTTTTGTTTTCCTTTTATTAGGTGATTTTCGCT # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATGGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 82503-82009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 82502 32 100.0 33 ................................ AGTCTATCGGTAATGCTATCCCTGAAGGTCTAG 82437 32 100.0 35 ................................ AAGGGTCATTGTTTTCTGAGACAAAGTTACACCGG 82370 32 100.0 34 ................................ CAGGCTGGCCGTACGAGCGTGTCCAACGCCAGCC 82304 32 100.0 33 ................................ CACGAAAGACGTTTATCATTCAGGCTCGTCCGG 82239 32 100.0 35 ................................ TCAGGCTTGTGTTGGCTGGCTACCAACTTTACATA 82172 32 100.0 34 ................................ CTGTATTTATAGGAGGGAAGCCATGAGTATTAAC 82106 32 100.0 34 ................................ CATACTTGCACCATGGAAATCAATATGTCGTCCG 82040 32 96.9 0 G............................... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.6 34 ATCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CGGGTTAATGGGCATCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGGTATAAGTAGCCGGCAGGCTTTGTATTTTTGGGGAAAGCACGTAATTATGAGTGGCGGTGAGGCCAGTGTTTGTGGAATGGGCGATTGCTTGCAAAAAGACATTAGATTTTGATCTATGATCATTAAAAGTGGAGGACGTGATATAATTTGGATAGTCTGACACGCTGAGAGGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTCAAATATGAGAAAATATGTGTAAAAGTGGTGAAATGTTGTTAGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTGACAGCACCTTCAGTCTTTTTACTTTACTCAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 129173-128942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 129172 32 62.5 35 CC.....CAAAAACA.TC.............. CATATACCGCGCCCATGTCGATAGAGCCGTTAAGG CC [129155] 129103 32 100.0 33 ................................ ACCTCCTTTCAGTCGTCCTCCCAGCTGACTAAT 129038 32 96.9 33 ..................A............. CTTTCTTTGCTTTTTCTGTCCGGTCTACAAGTG 128973 32 78.1 0 ..........A....A......C.CA.A..C. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 84.4 34 GTCGCACTCTTTGTGGGTGCGTGGATTGAAAT # Left flank : AGTTTCCCTGAAATCAATTCACCGACAATCCAAAACTGAGCAATCGGTATCCAGCTTAGCCAAGGGTGACGGATATGGGCATTCTTGGCCATTCTCGATAAAGCAGCGGCCACTATTAAATGAGCAATAAGCCAAAGGGTAAATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAATACCCCCTTCCCAGCTATATAATCAATGTTTAGGATGCCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTAGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCACTCGCTGAAGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCA # Right flank : AAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCTCAATTCGAGTGCATAATACGTTTCTCTCACTAGGCCAACAAGTGCATCACATCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTTGGGTTGAAAGAGCAAAGAGAGCATAATGCAGCATTCGCAAAAGATTTAAAAGAGCAAAAAGAGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAGTTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGCCATGGCACACGACATCAAGGAATTGAAAGAAGATCAAATCATGGTTAAACAAGCGGTGCTTGAAACGAATCAGAACGTCAAGAACATAG # Questionable array : NO Score: 6.27 # Score Detail : 1:0, 2:3, 3:3, 4:0.22, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 143542-142710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWK010000006.1 Alkalihalobacillus clausii strain ZBGE1 contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================= ================== 143541 32 96.9 34 ..........A..................... ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 143475 32 96.9 35 ..........A..................... CAAATACTTTGCGAGTTCAACGCCGTCGTCTACGC 143408 32 96.9 36 ..........C..................... TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC TA [143395] 143338 32 96.9 33 ..........A..................... GATCATCGTTTCCCCTCCTATCTATAATCCGCA 143273 32 96.9 35 ..........A..................... TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 143206 32 100.0 34 ................................ GATTTGATTTCGAGGCCAACTCGTATTACTTCGC 143140 32 100.0 34 ................................ CAGTACGCCCACAACGACGCCGCGCCCAAGAACG 143074 32 100.0 35 ................................ GTCCGACTTGTCTTTTTTATCTACGTCCGCCTGCA 143007 32 100.0 33 ................................ ATTTATGTGCTTAATACTTAATGTTTTATCTTC 142942 32 100.0 34 ................................ CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 142876 32 84.4 103 ..........A..C........C.......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAAGTCACACGTGTGTAAGTAGTAGAGTCAAATAACAGTTTCTCTGGCCCCCACTCTTTTTCACGCAAAAAC 142741 31 78.1 0 ............T........AC...-..TCA | A [142729] ========== ====== ====== ====== ================================ ======================================================================================================= ================== 12 32 95.6 41 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAATAGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAATCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGTTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACAC # Questionable array : NO Score: 8.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //