Array 1 419086-420937 **** Predicted by CRISPRDetect 2.4 *** >NC_018525.1 Pectobacterium carotovorum subsp. carotovorum PCC21, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 419086 29 100.0 32 ............................. TGTTACTCATTGGCATGTCCGCTGCGTTTCAG C [419091] 419148 29 100.0 32 ............................. GAACGGGGAAAAATTTCCGCGATGCTGACTAT 419209 29 100.0 32 ............................. AAACGCAGCTGCGTGCCGCGTTGCTGGAATCA 419270 29 100.0 32 ............................. AACGAGCAACGGCGTGAGATTATCAACCGTTA 419331 29 100.0 32 ............................. TTTACGAAAGAGCAGCAGGCGTTAATCCTTAA 419392 29 100.0 32 ............................. AAACCGACTGGGAATCAATAGAGCGTGATTAC 419453 29 96.6 32 ....A........................ GGGCTAACGGATTCTTTTGGGGCTGCTCCTGT 419514 29 100.0 32 ............................. CAATCGGATTCAATGCAGAGCAGGCGGCGGTC 419575 29 100.0 39 ............................. AGGCTTACGAGGCGGCAGGCGGGGCAATCCGCAACGACC 419643 29 100.0 32 ............................. CGACAGCCAGCGCATCAACTTCTTACCTGAAC 419704 29 100.0 32 ............................. TGGCGTCAATGGTGTTTGGTGTTGCGATTGCA 419765 29 100.0 32 ............................. TGAGTGCTGCTGATAAAGGTGCAGCTGCTGCC 419826 29 96.6 32 .............T............... AGCGACGACGATGTGATCGCGACTGTGGAAAC C [419831] 419888 29 96.6 32 ............T................ TTGGCGGCTTGTGGCGTATCTTGATTCATCAG 419949 29 86.2 14 .......T..T..G.........G..... ATGCGAGCGCGGGC Deletion [419992] 419992 28 82.8 32 .G....TTT.-.................. TAGAACTGATCTCCGCCGTGGCCGATTTGGCT AA [419998] 420054 29 93.1 32 .A.........A................. CATATTGGAAGCCATTGGCGCTTATAACGCTG 420115 29 100.0 32 ............................. TTATTGGCGAAATCGTTCCGGGCCTTTGCTTC 420176 29 100.0 32 ............................. TTATTGGCGAAATCGTTCCGGGCCTTTGCTTC 420237 29 100.0 32 ............................. AGCGTTCCCGATACGCCACCGAATACGTCATT 420298 29 93.1 32 .A.........A................. CCCGACAGCAGGAGCAACACAAAGAAACCTAT 420359 29 100.0 33 ............................. GACTGCCAGTCTGACGATCCTCCGAGCCCAGCA 420421 29 100.0 32 ............................. TGCGGCGTGATCTGGGGTTGTCTCCGTGGCCT 420482 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 420544 29 86.2 33 ........T....A..T........G... ATTGATGATGAAGAGCAGCAAAAGGCGCTCAAT 420606 28 93.1 30 .A...-....................... GACAAACAAGTCGCACTCTGCGGCAATGCC 420664 29 93.1 32 ............T...T............ GTAAAACGTCAGAAAAAAGTGTTATTGCATCA G [420666] 420726 29 96.6 32 .........................G... AATCGAACGGTGCCGATCTCACAGTGGCTGCA 420787 29 96.6 32 ........T.................... CCTCCTACGGTGCCGCCCGTACCTCTATGCGT 420848 29 96.6 32 ............T................ CAAAGTTCATTCACTGATGGTTCATCTCCACC 420909 29 89.7 0 ........T.................TT. | ========== ====== ====== ====== ============================= ======================================= ================== 31 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGAGTGAGAGAGATGGTCTGGCAGCAGATTATTGAACTGGCAGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAATCGACGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATTCCGAAAAAAGTGTTATAAAACAACGCTCTAATTTTATA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTTTAAATATCCCCCGCACGGAACCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTCACGGTGATGTGCGATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCCGCCGAGCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTACTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3974969-3972661 **** Predicted by CRISPRDetect 2.4 *** >NC_018525.1 Pectobacterium carotovorum subsp. carotovorum PCC21, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3974968 28 100.0 32 ............................ CGCGATAGCTAATCCCATCGTTGGCTCCTTTG 3974908 28 100.0 32 ............................ AGCTACTCTGGCGACAACTTCCTAAAAATCAA 3974848 28 100.0 32 ............................ AGAAAAACCAGGCGCATACCCTCCTGTTTTTG 3974788 28 100.0 32 ............................ TCTGCCGTTGTGAATTTCGGCTTGATGCCCGG 3974728 28 100.0 32 ............................ CAAAGAATACGTAGCAGCAGCCATCGTATGAC 3974668 28 100.0 32 ............................ AGAGCGCCATTGATACGGTGCTAAAGCCTGTT 3974608 28 100.0 32 ............................ TGAAGGGGGCTATGTTGGCGTGATGGCCACGG 3974548 28 100.0 32 ............................ TGGCTAAACTCGCGGGTGCGTCCGGGCGTGTG 3974488 28 100.0 32 ............................ TGAAAAGCCAGAGGGATACGATAGCTAAAGCT 3974428 28 100.0 32 ............................ TAACGTTGCCATTCTCGGACGTTCAACGGCGA 3974368 28 100.0 32 ............................ AGAGACGCTTGGAACGCGGACAGAAACGCATC 3974308 28 100.0 32 ............................ ACGCAATGTATCTGCCAGAGGCTAGAGGATTT 3974248 28 100.0 32 ............................ AGTCAAGGTGCGCGATTAACCACGGCAGAGGG 3974188 28 100.0 32 ............................ TGACCGATGAAGAGTTAGATCGCCGCTTGCAG 3974128 28 100.0 32 ............................ CTGGATGGATAAAGGGGAACCGCTCAAGCTGT 3974068 28 100.0 32 ............................ CGATTGTGCGTGATTACCGCGATGCATTGAAA 3974008 28 100.0 32 ............................ TTACCATGCCGGTAAATCTTATTGAGGGCACC 3973948 28 100.0 32 ............................ AATGCCTGGGTTAGCAGCTCCTTCACGTCATT 3973888 28 100.0 32 ............................ ACGCTGGCGACGGCCTGCGCGCTCTCAACCCG 3973828 28 100.0 32 ............................ AATCTCATCATTCGGTAGCAGGACGCCGATCG 3973768 28 100.0 32 ............................ GTACTCGCTCATTACCGCCTTGCGGGAACCTG 3973708 28 100.0 32 ............................ AGCAATAACCCCAGCCACCAGCACCAGACCAG 3973648 28 100.0 32 ............................ ATAAACGGCATGGTGACAGCGCCTATGCCATC 3973588 28 100.0 32 ............................ TCTGGGGATCACCCCAACTACGCTCGTTGTTG 3973528 28 100.0 32 ............................ ATTTCACGCACGCCCCACCAGCCGCGCTTCAC 3973468 28 100.0 32 ............................ ACTCGGCATCACAAAAATCCGCATTGAGGCCG 3973408 28 100.0 32 ............................ TACGGCTCTTTGGATGGCGCAAGTCGGCGCTC 3973348 28 100.0 32 ............................ AGTAGCTCCTGTAGGTATTCCGATATTCAGGA 3973288 28 100.0 32 ............................ GTGCTGAGCGAGAGGCTGAACTGGAAGCAATG 3973228 28 100.0 32 ............................ ATGACAACACGAAAAATAATCAGTGACTATTT 3973168 28 100.0 32 ............................ GGGTCCATGATTATCGCGCTATTACCGCGCTG 3973108 28 100.0 32 ............................ CGGCGCTCAGGCGGCAATTGCTGCTATGGGAA 3973048 28 100.0 32 ............................ CCGTGCGGCACGCTCCCGGATTGAACGCGGTA 3972988 28 100.0 32 ............................ GATCACAGCCGCCGGATCGACGGCATAAAGAA 3972928 28 100.0 32 ............................ TCATAGCCCAGCATTGCAGCTAATTCGATAAA 3972868 28 96.4 32 ...........C................ AGTAAACGCTCTGTATCCGTGGCTGATACACC 3972808 28 96.4 32 ...........C................ GTCTTCATCAACCAGTTCATGCGCCTTAAAGA 3972748 28 96.4 32 ...........C................ CACCAGCGTAAAAACGGTGTAGTCGTTGAAGT 3972688 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATAACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGTCCACCGTTAACGAGAATACGGCAATGCTGGAGATAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACTGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTTTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCTAACCCTAATCAATCGTGGAAAACGGCCATATTTGGTTGTACCGATCCTGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //