Array 1 26099-29622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUJ010000003.1 Campylobacter concisus isolate 2010-31374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26099 30 100.0 36 .............................. ACAAACGATCATAGAGCAATACTCGAGTGGAATAAA 26165 30 100.0 34 .............................. AAATCTCTTGGTGCTTGGAATGCTTTTTGTGATG 26229 30 100.0 36 .............................. AGAGTGATGGTTAAAAATACTGGGACTTGAAAATAA 26295 30 100.0 35 .............................. TGCTGAAAAGTTGGGCTTTGTTTGGGCTGATATTG 26360 30 100.0 37 .............................. ATGTCATCATCGCTCTGCGCTCCGCAACTATCGCACA 26427 30 100.0 37 .............................. TAAGCCATATCCATATAGACTTTTTGTACTGCTTCTG 26494 30 100.0 36 .............................. ATTTGAGTAAAACTGAGATTGATGGAAAACTGCTCA 26560 30 100.0 38 .............................. AAATTTGTGCTGTTTGCTTGATTGTTTGCTGGCTGCCA 26628 30 100.0 37 .............................. GTGTCAAATGCAACAAACGATCCTGGAAGACAAACTA 26695 30 100.0 35 .............................. TTCTTGCCAAAAATGTTTTCTAACTCATTTGTTGA 26760 30 100.0 38 .............................. TATGGTTGTGTATTCGTCCTTGACGAGTGCCATAACTT 26828 30 100.0 37 .............................. TATCTACTTCCTCTATCTTTGCCTCATCTTTTGCCCA 26895 30 100.0 39 .............................. TTGAATTAATATGGATATATAGGGTTGGCTTTATAATAT 26964 30 100.0 35 .............................. CTAGTGATTATAAATGCATTGATTGTTCTAGTGCT 27029 30 100.0 37 .............................. TCCGATCACATTGATTTTGACTTGCATCTAATCCTTG 27096 30 100.0 35 .............................. CAGCGAGCTGGCGAGATAAGTGAGCTAAATAGACA 27161 30 100.0 34 .............................. ACCAAAGATGGAGAATATGATGTATTAGGTAAGT 27225 30 100.0 35 .............................. TTAATCGACAGCGCGATCGATGATGTTTTGGATAA 27290 30 100.0 35 .............................. AAAACACCATTAGCCCCCTGTATTTGTGCTCTATC 27355 30 100.0 33 .............................. TGAAAAAAACCGACAAAATCGACGCATACACTA 27418 30 100.0 35 .............................. CGAGCTAAAAGAATGTGAGCCGATAGATGGCATCG 27483 30 100.0 35 .............................. GAAGCAATGAGCAAGGTTGAGCCACAAAGGAGAGG 27548 30 100.0 37 .............................. TCACCACTTCCGCCGTATGTGTAGCCTATCACGTCAA 27615 30 100.0 37 .............................. AAAAGAGTGTGTTTAAAGCGCCAACTGTTAGAACTGA 27682 30 100.0 36 .............................. TAGAAAATGGCGCTCTCCCATACTTCTCAGGAGTAC 27748 30 100.0 35 .............................. AAGAATTTGAATGGCTTTGATTTTAGCATATCAAT 27813 30 100.0 36 .............................. AAACACGCTTTGCGTGGCGCAAGCGATGATGCGTTA 27879 30 100.0 36 .............................. ATCGAAAAAGTAAAAATATTTTACAAAAAAGAATTT 27945 30 100.0 36 .............................. CTTCTACGCTTGAAGCTAAAAGTGTGCCTGATTTGA 28011 30 100.0 37 .............................. ACGTGCTTAAGGGTGCTAAGAAAGTGCCACAAACCGA 28078 30 100.0 38 .............................. GCAAGCAAACTAAATAAAACTGCAGTTTGGGTTTCAAG 28146 30 100.0 34 .............................. TATGTTATTGTATGCTTAATTATACATACAAAAG 28210 30 100.0 34 .............................. AGATAATGATCTCGATGTTTAGAAAGATGCTTGA 28274 30 100.0 36 .............................. ATGCTTATCGCTTTATCCTCTCAAAGTCTAGTTTTT 28340 30 100.0 33 .............................. AGGGCTTGACGTGCAGCGCGCAAAGCTCGGACG 28403 30 100.0 38 .............................. AACTGCGTGATCGTTAGTTGGCGTGAAAGCTTAGGCAT 28471 30 100.0 36 .............................. CGGCGGTAAAGAGCTAGAGCGCGAGACTGCTAAAAG 28537 30 100.0 36 .............................. AAAGTTTTATTCTTGATTAGCTTTTTGATGTCGTTT 28603 30 100.0 37 .............................. AAGAACTCTTTAGCTACTGATAGGTGGAGATTTATCG 28670 30 100.0 38 .............................. GGCTGTGATACTGCTCACTTTCTAGCAAGAGCAAATAC 28738 30 100.0 37 .............................. CCGAGATGGCAGCCAAAACCGCCGTTGCTTTTGACAT 28805 30 100.0 33 .............................. TAGTTCGCTCTTGCCCAGCTGTGACGCCCAAAG 28868 30 100.0 35 .............................. TAAAACTTTTGAGTGATAGGATCAAGCCAAAAACC 28933 30 96.7 39 ....T......................... TTTGCGATAGACGATACAAAAGACGCCGACGCTACAAAT 29002 30 96.7 34 ....T......................... TGCAAGTAGTCCGTTTTAACCTGCCATATATAAA 29066 30 96.7 35 ....T......................... ATTGATTTGCTAGATGAGTTTTATACAGTATCTAT 29131 30 96.7 35 ....T......................... TCCTTTTATAACTTTTTCATAAGTTGCCTCAAAAA 29196 30 96.7 37 ....T......................... TTGACATCTTCAACAACATAGTTTTTCAGGTCAATAC 29263 30 93.3 35 ....T.................C....... CTAGCTCTTCAAATCCGCTAAATTTAAGCACATCA 29328 30 96.7 35 ....T......................... TAAAAACCCCTATTCAAAAATCATCAATCGATATT 29393 30 96.7 35 ....T......................... AAAGATTAAAAGCTTGTGTGTAGTTCATTTTTCAT 29458 30 96.7 38 ....T......................... TTGTTATGTCTATGTTTGAAGTTGAAAAGCCTGATAAA 29526 30 96.7 37 ....T......................... CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 29593 30 86.7 0 ....G.........T..........T...T | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 99.1 36 ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACTGCAAAAGACTTCCAAACGGACGCTGGTAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGATACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTAAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGGAGTTGGACCCAAATATGGGCCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGGTATCTTTTTGAAGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTTTCTTCATAATACTCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //