Array 1 5981-2408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEAG010000376.1 Myxococcus sp. CA018 NODE_376_length_6584_cov_6.33824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5980 36 100.0 34 .................................... ATGCCCTTGGAGACGGAGGTGGGCTGCGCGGTGC 5910 36 100.0 35 .................................... TAGGCACCCTGCAAGTGAGGCCATATGCTTTTGTA 5839 36 100.0 34 .................................... TGCCTAGCAGCTTCGAGCGCCCACGGAACTTGCG 5769 36 100.0 38 .................................... CTCACGGTCATGAACACGGGAACCCTGGATGACCTGCG 5695 36 100.0 34 .................................... TCGTAATAGGGCCGCAGGACGCCAGTTTGATGCG 5625 36 100.0 35 .................................... GTCGAGGCAACCGCCGTGGAGAGGGGATTGGCCTT 5554 36 100.0 36 .................................... TAATAGCCCATCGCTGCGCTGACCATCAGCGTGTAG 5482 36 100.0 35 .................................... CGCTTCACGTGGTAGATGCGCAGCTCGCCGCCGAG 5411 36 100.0 39 .................................... CTTCTTCATGGTGCTCTCTGGCGGCTGCGAGGTGAGATG 5336 36 100.0 34 .................................... TGTTGGCCTCTGCCCTCTCTGACCTCTCATGGTC 5266 36 100.0 36 .................................... GTGTACGGCGCGGGCGTCGATGCGCCGAGGAGCACG 5194 36 100.0 33 .................................... CGGCCGGATTCGTCCCGCTCCAGCTCGCCGGGC 5125 36 100.0 38 .................................... ACGTGCAAAACGTCCTGAGGCTGATGCGCAACTTGCAT 5051 36 100.0 37 .................................... AAGCAGAAGGCCGCGGCCGCGCGCGCTGGCCAAGGTC 4978 36 100.0 37 .................................... CCTAAGTAGATGCCCATCTCCGGGTGCACCAGCAGGT 4905 36 100.0 33 .................................... CACTACATGGCCGCCAAGGAGGCGCTCTTCGAG 4836 36 100.0 35 .................................... ATGGGCTGTCGCTGGGTGTCGTCGCGTATGACGGT 4765 36 100.0 42 .................................... ACAGCCTTCCTTGGTCGTGGTGCGCTGGCGGTGTCTCTTCCA 4687 36 100.0 37 .................................... TCAATGATTTCTCATACCCCCGCCATCTCTCTGTCTA 4614 36 100.0 41 .................................... TAGCGCCTGCTCTCCCCTGCACGGTGCGCCGCCGCCTCGGC 4537 36 100.0 41 .................................... AGGTCCTTGGTGCCGTTGGGAAACGGCACGAGGGTATTGAG 4460 36 100.0 39 .................................... GTAAATGAGGCTGTAGCTGCGGGCCTGGGTGTCATTGAG 4385 36 100.0 33 .................................... GAGTCCAGGACGCTGTAAACGGGCTCAACGTAG 4316 36 97.2 37 ..........T......................... CCGCCGTAGGGCTTCGGGCCGACGACCCAGAGGGAGT 4243 36 100.0 36 .................................... CCTCCCTTAGCGAGTTTCCACCTCTCAAAATCCAAG 4171 36 100.0 37 .................................... AGCCAAGGGCTCTTCACGCTCCAGCCGGGGCGCTTCA 4098 36 100.0 35 .................................... GTGCGTGTGGCCATCGCGATCCCCGAGGACGGGAA 4027 36 100.0 35 .................................... TTGCAGTTGGCGCAGTACTCCGACGTCAGGCTGTC 3956 36 100.0 36 .................................... TGACGGAGTACGTAATGTAAGGGATTGCCTTGTACC 3884 36 97.2 37 .........................T.......... CGGTTGGCGCTTGGGCCATGGGTAGCTTCTGGTTCCA 3811 36 100.0 37 .................................... CGGTAGTCCGCGGGGAAGTCCATCGCGCGCTGGAGCT 3738 36 100.0 36 .................................... ACGTCCTCACCGGTCATCAGCCTGTTCCGCGCGATG 3666 36 100.0 34 .................................... GCCCGAAGCAGCGGCAGCTTAGGGTCATTGGCGA 3596 36 100.0 35 .................................... TGTATTGTTCAGCGTCGCCATACGCATCAAGCGGA 3525 36 100.0 35 .................................... TCGAGCGGCGACGTCGTCGGCAACTGCTCCGCCGC 3454 36 100.0 39 .................................... TTCCCTGATTTCAACATGGGCACCTATGAGGAGTGCGCT 3379 36 100.0 36 .................................... CGTTCACCCCCGAGGTGAAAGCCCCGCTGAGTTGAT 3307 36 100.0 38 .................................... ATACGTCTCCTCTGTTGCTGTGGATGTGGCCTAGGACG 3233 36 100.0 34 .................................... AAGGAGCACATGAAATTCACGGGCAACGACAAGG 3163 36 100.0 37 .................................... CCCTTGACGGTGGTGCTGTTTACGGCAACACTGAAGG 3090 36 100.0 35 .................................... CACTGCTTTTGTCTTTCTGTCAGGACCTCGTAGTT 3019 36 100.0 36 .................................... GATACGCTCCAGGCCACCCCGCATCGCAGCCACCTC 2947 36 100.0 39 .................................... ACAGACTCCACGTCGGACGGGAGGGGCAGCTCGTTGAAA 2872 36 100.0 33 .................................... GAAGAGGAGCTGCGCGCCGCGCGGGAGATTATC 2803 36 100.0 36 .................................... CCATGGCCAGCAGGCATCGGGAGGCGCGGGCGTGAA 2731 36 100.0 34 .................................... CGTTCAACCGCGAGGAACGCGCCGTCAGGGAACG 2661 36 100.0 37 .................................... TAGTTGGCGCGGTCCTGCGCAGTCGGAGTGGTGCTGG 2588 36 100.0 36 .................................... CGTCCTTCCAAGTCATCCACGACGCGCTCTGCCGTT 2516 36 100.0 37 .................................... GTGAAATCACGGAGTCGGGAAGCAGCATCCGCCAGCG 2443 36 97.2 0 ........................T........... | ========== ====== ====== ====== ==================================== ========================================== ================== 50 36 99.8 36 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TGGCGTGGGTGGAGGCCCGGCGCGCGGACAAACTGGAGCAGAAGCAGGTGTTGGCTGTTTTCGAGACGGATTGGCTTTCGCGGCTGGTCTCCCTGTCCCCCGAGGCTCGCGACGCTGGGGCCAGGGCGCTGCGGTCGCTCGTCAAGAGCCCCAAGCTCGAAGCGCGAAGGGATGCGCTGCTCGCCCGGATGGGGACGGACGTGGAGGGACGCTGAGGGACCTGCTCCCCCCCGTGTAGGGGCGCTGTATGATGAATGACATTCAAGCACCTCGCCGTGGCGGAGGCCCGCGCCCTCGAAATGGACGATTTCCCCTGTTGTTTCGTGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCTGAGTGATTCCATGGGGTTCGGATTTCTGGGTAGGGTCCGGGAGGCACAACCCTGGCGAAAGCGGGGGAGGTGCTTGAAAAGGGGGGTGGTAAGTTGGCGGAACTGCTGGGAGATTCAGACGGGCA # Right flank : CCAGGGGCGGGAGTCGAACCCGTACCCGGGAGGAGCGAAACCCCAGCAGGATCGCGCCCTTTCCTCTCAACCTCCTGGACTGCGTTGGATTCGACCTCCCGCCACATCCCCTGCCGTCCCGCCCTGTTCCAGCGCGCTCCGCAGGGGCATGCGACACACGTGCAACATGGCGGGGCCTGAAAGAGATGGGCTTCAACCCGCCTAGAGAGAGGCCGAGTTGCGGATGGCTCGGCCCCTCTTGTTCCTACGATTGGTGCTGGAGCGGCTCCAGTAGCCCCGCGCCGTCCAGCACTTCACGCACGCGGTCAGCAAGTGCCACGTGTTCTGGGTTGCTGACCGTGAAGCGCTCGGGAGTGAGGACGATGAGGGTCCCTTTGTCTCCCACGGGTTCGATGTGGACCGGAGCGGGGAGGGGAGGAATTGTCCCCCGGTGCTGGGCCAGGTACGTCACCCACCCGACGTATGGCGATTTCGGGACGCGCCGAGCCTCAGCAATATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 1460-4724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEAG010000004.1 Myxococcus sp. CA018 NODE_4_length_81973_cov_5.91716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1460 36 100.0 35 .................................... TCGTGGGTGTCGCCGTGGCGCATGGCCGCATACAA 1531 36 100.0 36 .................................... ACGCTTCCGGGTATTTCGACCTCGAAGGCTCCCACA 1603 36 100.0 35 .................................... GACAGCGCCTGCCCGTCCTTGCCCGCCACCTCGTG 1674 36 100.0 34 .................................... TACTTCTCAATCGCTTCAACCAGTTCCTCCCCAT 1744 36 100.0 36 .................................... ATATGGAGAAGCTTTTCTCGAAATTTTTCCGGGCTC 1816 36 100.0 37 .................................... TTACGGCCTGCGCTGGGCGCATGGTGGCCAGCGAATG 1889 36 100.0 34 .................................... CGGTCATCGGTCGTGTCGTAGCCGGTCAGGCGCT 1959 36 100.0 35 .................................... AGCCCGCTCTTCTCGTGCATCGCGAGGGCCCCAGG 2030 36 100.0 35 .................................... TTGTGGGCCATGGTGAGTTTCCTTTGGGGTTGGGT 2101 36 100.0 34 .................................... TCGAGTTCCGCCGACGCCTTGCCGTAGGCGACAT 2171 36 100.0 35 .................................... AACTCCACCGACTTCGAGGGCCAACCCGACTGGCT 2242 36 100.0 39 .................................... CAGCAAGCTTTGCAGTGCGGAGAAATGCCGGCGGGAATA 2317 36 100.0 35 .................................... GCCTGACCCGGCTCAGCCGTACGGGCCGTTCCCGG 2388 36 100.0 36 .................................... ACTAAGCGCAAGCCGGGCAGCAATAGACCGACTATC 2460 36 100.0 34 .................................... TAGAGGCTGAAGCGGTTGCGCTCGCCCGCGTTGA 2530 36 100.0 36 .................................... GCACGAGTCCTCGGACGGAACAGCGCAGGCGCCTAC 2602 36 100.0 34 .................................... TCTCCCCTCGCCGCAAGGCAGGGGCGGTCCTCAA 2672 36 100.0 35 .................................... GAGGGATTGCGACACGTTGCCCGTCCTGGGTCCAG 2743 36 100.0 35 .................................... AGGATCGCGTAGAGCACAGCCACCATCTCCTCCCG 2814 36 100.0 38 .................................... TGTCCTGGCGGAATGACTGCATGAACAACCCCATTCCG 2888 36 100.0 39 .................................... TCCTGTTCAACGTCGCCCGTCGCCATCACGCCTCCTAGG 2963 36 100.0 34 .................................... GCAACTGGCGCGGACTGGCGTAGAAGGAGTCCAG 3033 36 100.0 36 .................................... CCGAGCAGAACCCCGGGTAGTTGGCCTCTACGACAC 3105 36 100.0 36 .................................... TCGGAGCGCTGGCCGAAGTAGATGGTGACGTTGAAG 3177 36 100.0 38 .................................... GTCCCGCCAGCACGGGGCGATTGTCACCACCTCGGACG 3251 36 100.0 37 .................................... CGTCGGCTGCGCAGCGGGGCTGTGATGGCGGCAGTCA 3324 36 100.0 41 .................................... CCGGAATAACTCAGCGCCTTGAGTACACTTGGGTGGTCCGC 3401 36 100.0 37 .................................... TCCTCCGTCACCAGGGACAGCGCCTCCAGCGACACCT 3474 36 100.0 37 .................................... CCCTAGCAGGTACCACGACGCACTGACACCCCATGGC 3547 36 100.0 36 .................................... TCCCCCATAGGCTTCAGGGAAACGGTCACGAAATTG 3619 36 100.0 33 .................................... TTCCTGGACCCCGCTGGCGCCGCCGAGGTCAAC 3688 36 100.0 36 .................................... AAGGTAGTCACGGCTGCGTCGAGCAGCTTGGCGAGT 3760 36 100.0 33 .................................... GTGATGCGCCGACGCAGCGCCTCTTCTTCACAA 3829 36 100.0 33 .................................... TCCTTCCGCAGGCGCACCAGACGTTGCAGCGGC 3898 36 100.0 40 .................................... ATGCTGTCGAGTCGCGACAGATCTCCGGCGCCGATGGTAC 3974 36 100.0 34 .................................... TCGTCCCGTTGCACGAGATCCGCGACGAGGAGAA 4044 36 100.0 36 .................................... CTGACGCCCCTCCAGTCGAAGAAGGGAACGAGCGTG 4116 36 100.0 37 .................................... ACGTCGGCCACCTCCCCAAATGCGTCAGCCGTCGTCT 4189 36 100.0 35 .................................... GCGGCAAATCCTCGCGGACGTGGCGCTGGAGATTC 4260 36 100.0 36 .................................... AGCGGTGAGTGCGCCTGCGTCGTGCCGTCCTCCAGG 4332 36 100.0 35 .................................... GCCCGGAACCGACGCGAGCGCCGCCAGGCACAGCA 4403 36 100.0 36 .................................... CCGGCCTGGGCGGCCTGCACGCGACCCCCAAGGGCA 4475 36 97.2 37 ...........T........................ GTGACGCCGTCCGCCGCCCAACCCTCCAGTCCGCAGT 4548 36 100.0 36 .................................... AACCGCTCGCTCTTGGTCATCTGGGTCATGGTGACC 4620 36 91.7 33 ...TT....T.......................... TCCTTCCGGCAGTCGCAGTTCCAAGGCTTCATA 4689 36 88.9 0 A.............................C.A.G. | ========== ====== ====== ====== ==================================== ========================================= ================== 46 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCGCGGCGGTGGCGGAAGGTGTATGCCCTGCTGAAGGGATATGGGGAGTGGTTGCAGCTCTCGGTGTTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGATGCCGTGGATACGTTGTTAGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAAGCAGGCGACAATCAAGCACCTCGCCGTGGCGGAGACCCGCAGCGGCGAAAACGGCGGATTCCTTTGTGATTTCATAGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATAGGGTTGGTGATTCTGGGTAGGGCCTGGGACGGCCAACCTGCGTGAAGGAGGGGGAGGTGCTTGAAAAGGGGTTTGTAAGGTGCTGGAATTGCTGGGAGATTCAGGCGGGCA # Right flank : CGTTGGGGGCGCGTCTGGGCGTTTGCACTGGCCCCTCGGAAGGGTGACCGCGTGACGGGGCCTCCAGCCGTTCCTGAGCGGCGCTGGGGCCACAGCCCCATTACCGGAGTCCCCGGAACGAACACCCACAAAGTGCGCAATCCCTAGTTGGTCGGAGCGGTGCTTGGGGGTAATTGACTGTGTTTGTGTCAACATACGCGCAGGCTTGGTAGGATTGTTGATGTTGCGCAGAGGTCTTGTTGCTTGCCGCGAGTCGCCAATGGAATTTCAAAAGAGATAGGCTTTCGCCCATGGCCAATGCCGTTGGCGTGAACAAGATGTCCGTTGTCACCAAGGACTCCAATGGTGTCACCGTCGCCTTCCCGGACGTGTGCAAGACGCCAAGCCCCGCCGGGCCGATTCCCATTCCCTATCCCAACATCGCCAGGTCCTCGGATACCGACCAGGGCACCAAGAAGGTCTCCGTGGGGGGCAACCCGGTGTGCGTGAAGGACTCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1998-6718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEAG010000016.1 Myxococcus sp. CA018 NODE_16_length_58428_cov_6.21368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1998 37 100.0 32 ..................................... CCAGGTGCGGCAGACGCTGGCCCCGTTCGATC 2067 37 100.0 35 ..................................... CTCATGCTCGACGACTCGCACGAAACGCGTAGTCA 2139 37 100.0 33 ..................................... GTGACCGGCAGCAACACCATTACCTTCCGGGTT 2209 37 100.0 33 ..................................... GATGCCTCTGGAGCAGCTGGTGGATCGCTCGAA 2279 37 100.0 32 ..................................... GCGGCCTGAGCGCCTCTTCTCCTGGGGGCTGT 2348 37 100.0 33 ..................................... GGCGTGAACCTGGAATGGGCGTACCGCGCCGAC 2418 37 100.0 32 ..................................... ACGGGCAAACTCCTCGATTCTGAGGACTTTTG 2487 37 100.0 33 ..................................... CTCGCTTGAGGACCCGGAGATTTGGCTGCCGAA 2557 37 100.0 32 ..................................... CCGCATCCACCCAGCGCCTTGTCACAGACGGA 2626 37 100.0 36 ..................................... TCTGACGGCTGGACGGACGAGCGCGTGGAGCTCGTG 2699 37 100.0 33 ..................................... CCATTCAACGCGCCCGACGCATGGTGGTGCGTC 2769 37 100.0 35 ..................................... CTCTGGTGAGTGGCGGCTGTCTGACGCGTCATCTG 2841 37 100.0 34 ..................................... TCTGCTTCGTCGCGTTGCCAGCGGAGCACTGGCC 2912 37 100.0 33 ..................................... AGTTGCCGTCGCTGTCTGGCTCGCCTGCGCAGG 2982 37 100.0 33 ..................................... AGCCCCGGCACCCGCGCGGCCTGGGCGGCGATG 3052 37 100.0 35 ..................................... CGGTGAACACCACCTCGCCGCTGGCTGCGACGATG 3124 37 100.0 36 ..................................... ATGACAAGGCGCTGGCGCCACGTGCTCCATGGCGAG 3197 37 100.0 32 ..................................... TCACTGCCGGGCCCGCCCTACTCCAGCGGCCC 3266 37 100.0 36 ..................................... AACCAGGCGCTCACGTGAGCGCCGCATCCAAGGAGA 3339 37 100.0 35 ..................................... GATGAACCTCTCGCCGGGCCGCTCCATAACGGCGA 3411 37 100.0 35 ..................................... TCTTCGCGCTTGGCCTGGTCGGTCTTGGGCAGCCA 3483 37 100.0 34 ..................................... CATCCGCGCAACGGACGTCTGGAACTCGTCGAAA 3554 37 100.0 32 ..................................... TCTCCACTGCTGACACTCACCACGAGCGCCCG 3623 37 100.0 35 ..................................... GCTTGCGGCCCCCGGGCTCCTTTTTCCACCCCCAC 3695 37 100.0 34 ..................................... GACTCGCCCACCTCACCCCGACACCCGCACAAGA 3766 37 100.0 34 ..................................... AGGCGCTCAAGCGGGGCGTGAAGAAGCACGGGAA 3837 37 100.0 33 ..................................... TACAGCGGGGTGTGCTCTTCGCACGGCGAGGCG 3907 37 100.0 34 ..................................... CGCCCGGCTCCCCAATCTGCGGTCGACCCTCGGT 3978 37 100.0 35 ..................................... ACGTCAGGCGAGAAGATGAGGTCCAGCGGCAGGTC 4050 37 100.0 34 ..................................... GTGGACACGGGCCCCGCGGTCAATCCCGATGCGC 4121 37 100.0 35 ..................................... GGTGATGGCGTCGGGGACGAGATTTGCAGCCTGGG 4193 37 100.0 33 ..................................... AGCCCGATGCCGCGCGACTACGCTGGGCCCGGT 4263 37 100.0 35 ..................................... CACTACGCCCCGCCCGGCAGTGCCTGACGCGCCTG 4335 37 100.0 34 ..................................... GCGCTCCAGGCTGACGGGTGGTGGCTCCGCTCGG 4406 37 100.0 33 ..................................... TCCAACCGCCGGAACAACGCGAAGTCGGACGCG 4476 37 100.0 35 ..................................... ACCGGCCTGGGCTGGCGGGATGCTTCCAGGACGCG 4548 37 100.0 34 ..................................... ATGCAGATGCACGGGGCCCGGTTTCGGCTTGCCC 4619 37 100.0 34 ..................................... GGCGTTACGCTCGACTATCGAGCGGACGTTGTCA 4690 37 100.0 34 ..................................... GGAGTCTGTCGGCCGCGCTGACGCGAGGCCGGCG 4761 37 100.0 34 ..................................... GGGCGCTGGGTGAAGGACTTGAAGGGCCGCTACT 4832 37 100.0 34 ..................................... GTCGACGCCGTCGAGGCGAAGAAGCCGGCCAAGC 4903 37 100.0 32 ..................................... GTGGACTGGCCGCATGGGGGCCGGCGTCCTGG 4972 37 100.0 36 ..................................... TCTAACCTTGTCATAAATCCGCATCATCCACGTGTC 5045 37 100.0 34 ..................................... CGAAGTCCGCGCGGATGGCGTCATGCGCCTTGGT 5116 37 100.0 36 ..................................... TTCGCCTGGCCCGTCGCCTCGGCGTACCGGCGGAGG 5189 37 100.0 34 ..................................... GGCATCCCCGCGCGCAGCCACGCCAGGACGTCGT 5260 37 100.0 34 ..................................... CTGTTGTGCCAGTCGTCCGCGTCGTCGGGGGTCA 5331 37 100.0 35 ..................................... ACGGACTTGAAGTCGTTGCCGTCCATGATCACGTG 5403 37 100.0 34 ..................................... AGCCAGAGTCCAGAGCTCGACCGGTGGGGCCGGC 5474 37 100.0 34 ..................................... AAGGAGTCCGAGGTCGCCACGGTGTTCGATGCCG 5545 37 97.3 35 ..................A.................. CGTTCGGAGGGGCAGGAGCAGAGCGCCACGGCGGC 5617 37 100.0 34 ..................................... TCCGCCAGCTCCAGCACGAGTTCCAACTTCGACT 5688 37 97.3 33 ..T.................................. TTGGGGTCCGCGTTCTCAACCTCCGCAGCCTTG 5758 37 100.0 34 ..................................... TTACGCGACATGCAACGCGGCGCGCTCGACCAGG 5829 37 100.0 35 ..................................... ACCGGCGTAGAGCTGGGGAAGCACGGGCAGGGCAC 5901 37 100.0 35 ..................................... ACCGGGCGCTTCCGCGAGGGCTTCGGCGAGCTCGG 5973 37 100.0 32 ..................................... CGAGCAGTGGCAGCGCCCGTGCATCGGCCCAT 6042 37 100.0 36 ..................................... AGCGTGGAGCGCAACTCCGGGGTGGACCCGAACAAG 6115 37 100.0 36 ..................................... CCGTGAGTAGTTGCTGGACTGCGAACTCAAGCTCAA 6188 37 97.3 36 .........................A........... TACTCCCGCTTGGTGGACAACCTCTCCGGCCCCGCG 6261 37 100.0 33 ..................................... TTCCCGACGTTGGCCACCGTGTTGATGCCGCTG 6331 37 97.3 33 ...................A................. ACGCAGAAGCGCGAGCCCGTCTACGACGCGCTG 6401 37 97.3 34 ...................A................. ATGTCGCTCGACATGAAGGAGTTGTCGGGCTTCA 6472 37 97.3 32 ...................A................. CCCGCGTACCCGCGTGATGCGGGCGGCGAGCG 6541 37 86.5 34 ...........C.TT.A..A................. GTCTCCGCGGAGCTCTCCGCGTCGCCCTGACGTC 6612 37 89.2 33 .........T..T......A................G CTTGCTTGGATGGAGCAGGTAGAACTGACTACC 6682 37 91.9 0 ........G.A.....T.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 67 37 99.3 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGTGATGCGCTGATGCGTAGATTGACCGTGTTGATTTGTTACGACGTGCGGGTGTCGGACCCCCAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGATCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAAGACGATGCCCGAAAGACGGAGCATCATGGCGCCAGGGCACCCCTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCTATCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGCGGGGCAGGAACGGCGGGGCGCTTTCGTTGCCCCGCGGGCCGGTTCGCGAAATTCGGCCGGATTCCGTAGTCAGAACAGTATGTTGGAAGGGCAGG # Right flank : CGCCCACGACGTCGTGGGTGGCATCAGCCGCGCCAGTCGCTCCTCGTGAACGCGAGGACTCTCTCTCTTCAACAGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCGTGCTCAGGCTCCAGAAGTCACCGGGCATGCCCAATACACGGCACTTCTGGCTTGAGGTCTTCGGGGATGCCCGTTTCAAGCGCAACGGCTCGTTCCTATCCGACGTGAACGCGGCCAACGCCCATCGGCTCACGACGTTGCTCATCGCCGTGAGCCGGCTGGACGAATTCAAGGAGGATCGCAGCGCCCCTCCTCCCTTCGCACATGGCCGGCAGGTGACGACGTTCGAATTCACCGTGGACGGCCGGCGCACGGGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCAGCAGGAGGCTGCCGCTTACGGCATCGAACTTTGAGCGCGAGGACCCCGGGCGCCCCAGGGCCGGAGGAACACCTCCGTCTCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //