Array 1 551361-551125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018889.2 Beggiatoa leptomitoformis strain D-401 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 551360 35 100.0 32 ................................... CCGATATACAAAACCCACTACATCAGCATCTT 551293 35 100.0 33 ................................... CATGGTGTTTTGTTCTTCAAGGAATTGTTCCAT 551225 35 100.0 31 ................................... CGCCCCCCAAGTCTTCAATCAATGATGGGTA 551159 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================= ================== 4 35 100.0 32 GTTGCAGCCTTACTCGCCAATGCAGGCGATTGAAA # Left flank : TCGCTATAGCTTTGACGAACGGCTTAACAGAGGGAATAAAAATAAGGTTTTGGATTTTTCTATTTGAAGACCGAAAAAACGATGTTTATTCGCTATAATCGGTGGAAGTGTTGTGTGGATTTTTTCTTGTTCTGTGGGTTTATTAAAAAACTGAATAATCTAACAGGGAATGCTGACACCTAACTTTTAATGAGGAACATTGCAAGGAATCGTGATTTAGAGGAAAAAACCGATTTTTAAAGTACGTTTTGAATTGAACACGACTGAGCAATTTTCCATAAAATGAGAGGAAATCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGTATCGAAAAAGCGGAGATTTATGAAAAATGGTTGCTTGTAAATGATTGATTTAATACATAAAAAATCTATGCAAAAAGTGTGCAAAAGAGTTCTACTTTTTGAACGAATTTTTAGTGAAAAATATGGCTTGCAACTCAGCGAAAAATATGTGATTATTTTAACCATCGGG # Right flank : TGAAAAACCTCAGTACACTTAAAAAGTGCTGAGGTTTTTTTTATGCCTATTGCTTTATTCCCTATTGGCAACTACAGGGAATTTGTCCGCTGTTTCCGTGATTATCAGAAGACATATTAAAAGAATTAAAGCTGCGCAAAAAAGATGAACAACCCAGAAAAATAAGTGTTTCCAATTGGATACACGCTACACGGTTTTTTGAGGAATGAAAACCTGCCGAACAAATCCGCGCGTTCGCGCTGGGCGCAAATCGCGCGGACTTGCTCAGCAGGTTTGAAGAAAAGATTACAATTTGCTTGGTACAATCCGTGATGCCTCATCTTTAGATATTCCCAATATCGTACCCGGTGAATGTTCTCTACTTCCCAAGTTTTCCATTCCTTTAGGTTCTAGCACTTACACCCCAGATTTTTCAGAACAATCGTATTGCGACTTTTTCACCGCATTAGCCAGTTTTTTTATTTTTATGGTGGTTCTCTCGGCTATTTTTATCACCTTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTTACTCGCCAATGCAGGCGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 1967896-1967716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018889.2 Beggiatoa leptomitoformis strain D-401 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1967895 35 100.0 42 ................................... CAAGCGTGTAACCAGTCCGTTGTTCAAACTCCCATATGGTTT 1967818 35 100.0 33 ................................... CCCTCCAGCAGACGCTGAATATACCGAGTGTAC 1967750 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 3 35 100.0 38 GTTAACAGCCGGTTCGCCAATGCAGGCGATTGAAA # Left flank : TGCCATGATTTCTACAGGGGCAGAGCGTAATGATACGATTATTAAACAACACCCATTTGATTTATAAAGTATTATTTATGTAGAATGCGTGTTAAAAAGACGGATACTATTGTTTAAAGCGGTGGTATCCGTATGACTAAATGGCTTTGTTTGTAATAATATTAGTGCGTTATGGTGCGAAAAATCAGATGTTCGCTTTTATTGACGGAATCGCGATTAGAAGAAAAAACCGATTTTTAAAGTGTGTTTTGAACTAAGCACGACTGAGCAGTTTTCCATAAAATAAGAGGAAATCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGTGTCGAAAAAGCGATGATTTTTGAAAAAAAGATTGTTATAACTTATTGATTTTATGAATAAAAAATCTATGCAAAAAACGTGCAAAAGAGTTCTACTTTTTAGAGGAAAAAAACGTTCAAAAAAGGGCTTGCAAGCTACGATAAATTATGAGATTATTTTCAGCGTCGGG # Right flank : TGAAAAAACCTCAGCACTTAAAAAGTACTGAGGTTTTTTTATGCCTATCGTCTTATCCCCTGCTGTCCCTCATTGGATACACACCACACAACTTATATACCTGATGCACGCTAATTGCGTTTTTTAACACAAGACCTCATAAAATCCCACCGCGTTTAATATCTAAGTACCGATTAACAATATGAATCGCTAATTGTTCAGGTTCAGTATCTACGAATATAACCCCTTTATTTTTAAAATTTTCTTGTGATTGCGAGCGATGTCCTAAGTATTCATGAATAGCGGCATAACGTAAGGCATCATTAAACTGCATGACGGGAGCATCTAAAACTTCATTTAAGATTTTTTCGCGTAAACTGGCCAGTAGCACCAAATGTTTTGCACGTAATAGTTTGAGTGCAATAGTTAATTCTTCATTATCTTCATCGCGTAAATTAGAAATAAGAATAATTAAAGCGCGTTTTTGATGATGTTTTAGCAATTGTTCAACCGCGTTTAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACAGCCGGTTCGCCAATGCAGGCGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 3 3502031-3502610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018889.2 Beggiatoa leptomitoformis strain D-401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 3502031 36 100.0 32 .................................... ACCATAATCCCTAGGTGGACTTTGACATACGT 3502099 36 100.0 30 .................................... AGAAGCGACTTGATAACGCTACGAATTCTG 3502165 36 94.4 31 ........T...T....................... TTCATCAAATGTGTCTCGCCCGTCGATTCAT 3502232 36 97.2 30 ......A............................. CACAATGGAATTGATGAGTATTTGCTCCCC 3502298 36 94.4 33 ............................G....G.. CGTGCATTTCTCGCGCTGTTAAAATCAAGAGTT 3502367 36 100.0 34 .................................... ATAATCAACGATGGCGATGTTGCGTAGTGTTGAC 3502437 36 94.4 34 ........T...T....................... TCATCTATAAAAATCTATTAAGCACTTACCGTTT 3502507 36 100.0 32 .................................... TTGTCAGTCTCTCCACCATACTGCATTAGTTC 3502575 36 97.2 0 .............T...................... | ========== ====== ====== ====== ==================================== ================================== ================== 9 36 97.5 32 GTTGCAGCCTTACACGCCAATGCAGGCGATTGAAAC # Left flank : AAAAGCAGAGTCAGTTAAGCCGTTTAGCGTTATTTCAACAGACGCATGAGTCGGCATCGGTGGCAATGTTAGCCCGTTTACAGCAAGCGGCGATTCAGCATGAAAATGTGTTTGCGGTGTTGGTGGATGCAGTGCGGTGTTGTTCGTTAGGACAGATTACGAATGCGTTGTTTGAGGTGGGCGGGAAGTATCGGCGAAATATGTAAATAGGGTCTCAATCGGGATTTTCGGGGGAATTGTTGGAATATCCTGATTGAGATGTTAAGGGATAAAGAAAGCTGTTTAGGTGATTTTCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGGTCGAAAAATCGGGGGTTTTCTTGAAAACAGATGTTTTTAATTGTTTGATTTATAATAAAATTTCTTTATGCAAGAAACGTGCAAAAGAGTTCTACTTTTTCGATGATTTTTTTGTGAAAAATTTGGCTTGTAACTGGGTAAAAAATATGCGATTATTTTAGCCATCGGG # Right flank : CTTCAGAGCATGGTGGAATACGCTGCGCTATTCCACCCTACGTTGCTAGGTTGTGGCTTTACTCGCTAATGTGAGCGGTTCAGTCCATAAAAAAAGCCTCAGTATTTTGAATACTGAGGCTTTTTTTATGCCGTTTTAATCAATGCTAAAAAGGATTGATGGATACTGAATCTAACCCGCTACTATTTAACTAATAATGCTGTTATCTAATACTTGTTGACGTAATCGCTCAATAACACTGACTAAATGCCGTAATCCAATCGGTTTAGCAAGATATTCATTTGCACCTACATTCAAACACCGCTCCCTATCTCCACTCATGGCTAAAGCTGTTACTGCAATAATCGGAACCGTTTTAAAAGTTTTATCCGCCCGCAAGTGTGTGATAGCATCCAACCCATTCATTACAGGCATTTGTATATCCATTAATATCAAATCTGGATGCAATTTATTCGCGCTTTCAATCGCTTCTATCCCATTATGCGCAATCGTTGTGCGAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTTACACGCCAATGCAGGCGATTGAAAC # Alternate repeat : GTTGCAGCTTTATACGCCAATGCAGGCGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //