Array 1 1695-2496 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LTAS01000014.1 Corynebacterium diphtheriae bv. intermedius strain CCUG 2706A contig_22, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
      1695	    35	  77.8	    27	.GACAC.C..-...................A.....	TCCTACGGCTCATCTCCGCTGGCGCGG 	
      1757	    36	  97.2	    28	G...................................	TTGGCCGCGTCGGTAGCCATCTGGGACG	
      1821	    36	 100.0	    28	....................................	TCAACCGTGAAAAGGCGTGGAGAATGCT	
      1885	    36	 100.0	    28	....................................	GGTGGACTGCCAGCCCCTGGCAACCTCC	
      1949	    36	 100.0	    28	....................................	CACTGAGTTTGCTTCTCATTCCGGCGGG	
      2013	    36	 100.0	    28	....................................	GACCACCACGCCCCATCGTCGATCACTA	
      2077	    36	 100.0	    28	....................................	TGCGGCGCAATACCAGTGTCGCTGATAT	
      2141	    36	 100.0	    28	....................................	GATGATGTCGTCGAGGTGATTGGCGAGA	
      2205	    36	 100.0	    28	....................................	GATGATGTCGTCGAGGTGATTGGCGAGA	
      2269	    36	 100.0	    28	....................................	ACCCTCACACAATGGTGAAGATAGGGGG	
      2333	    36	 100.0	    28	....................................	CAAACACGTGGAAAGACAAGAACACCGG	
      2397	    36	 100.0	    28	....................................	TTTGTTGTTTCACCCCAATCAATCTGAT	
      2461	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        13	    36	  98.1	    28	ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                            	       

# Left flank :   AGGCGCTCTTGTTGACTACGTGGCCACCATCACGAACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC
# Right flank :  CAGGTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAGGCTCTTCCACAGCAGCCA

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.20,-3.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.78   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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