Array 1 15162-13544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBU01000009.1 Methanohalophilus euhalobius strain DSM 10369 Ga0139039_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 15161 37 100.0 39 ..................................... ATCTTCCAGACTGGATTCTTCAGGCAATCCTAACAACCG 15085 37 100.0 37 ..................................... TCTTGGGTGTTTGCATGTGAAGAGCCATTCATGTATT 15011 37 100.0 35 ..................................... AGTACACACCTATATTATATAAAGGTTACTATTTT 14939 37 100.0 38 ..................................... TTTAGAAGTTTGACTTCCAAAAATCTTTTTAACAGTGT 14864 37 100.0 37 ..................................... TCTTGGGTGTTTGCATGTGAAGAGCCATTCATGTATT 14790 37 100.0 35 ..................................... AGTACACACCTATATTATATAAAGGTTACTATTTT 14718 37 100.0 38 ..................................... TTTAGAAGTTTGACTTCCAAAAATCTTTTTAACAGTGT 14643 37 100.0 37 ..................................... TCTTGGGTGTTTGCATGTGAAGAGCCATTCATGTATT 14569 37 100.0 38 ..................................... GAACGGTGCATTATATGCAACTACAGCGCTTGAATCAT 14494 37 100.0 40 ..................................... TCTTACTCATTCCAAGATGTTGTTTTAGTTCATCTGTAGT 14417 37 100.0 39 ..................................... TGACGACCCAATGAAGGAAACTGCACCTATTCACTTACT 14341 37 100.0 39 ..................................... AGAAAGCAGTCAGAAAATCATTTGGAAGAACTCATTAAT 14265 37 100.0 38 ..................................... TCTTCAACTCTCATTTCAAGTGCATGCACAACTGGTTC 14190 37 100.0 40 ..................................... TGTCTCATATTTCCAACTCCATAAAAAATAGGATACTCTT 14113 37 100.0 40 ..................................... TTGTGTGTATTATTGCTGTTTTTTCATTGCTCATTTTCAG 14036 37 100.0 37 ..................................... TCTCTGATGCTCTCCTCGATTGCCCGGGCACCTGTTT 13962 37 100.0 38 ..................................... TTTTCAGCATAATCCTGTAAGTATTGCCACAGTTTATC 13887 37 100.0 37 ..................................... ATTCAATTGCTTTTCTTATCCCTGCATCAGTCCAGGC 13813 37 100.0 45 ..................................... CAATGTATTCATAGAGTATGCTGTCTTTCATGTTTCTGCCTCCAA 13731 37 100.0 40 ..................................... TTATTTTTTTCAGTCTTCACCGTTAAACCAATTCGGATTT 13654 37 100.0 38 ..................................... ATCTTCAAGATACATCAACTGCGATCTCATATCTGCAA 13579 36 97.3 0 ......-.............................. | ========== ====== ====== ====== ===================================== ============================================= ================== 22 37 99.9 38 GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Left flank : TGACGTTTTGATTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACACTCTAAATAATAAGAAGAGGATTCATATAAACTTATTGTATTTATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATAAACGCACCTATATGATTTTAAATCATGAATACGTCATAGATTTAATTCGATTAATGAACTATGTGTAAAGACCTTTATAAGGGGTTGAGCCAAAAGGAGGTCTGTACACACAGATTATCATTTTCAGGCAATTGTGGGTTTAATTTAACCTTAAACAGACATTGAATATTTATCAATCTTTTTATTATGAAGCCTGCAGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : TCGTCATCGACGAAATGGAGATCTATTCCTTGATTGATCAGTTTCAAATATAAATTCATCTCTTTTGAAACAGGAGATTCCTTCCGTAAGGTAGGAGAGATAAGAACAAATTTTATCGAAGTTCTGGAAGAGTAACGTTAATCTGAATCCTTAATACTACTTTTTCAAATCAAATCACCTCTAAAAAATACAATGAAGTCCTACCTCTCCTAAAAAACTGAAATAACAAAACTTATACAACTTACCATCAATCATTTACTGGAAATATAAAATATGAAAGGGGTACTAAAATTGGGAGATATCGAACTCAATCCTTCACAATCACAGGCAGTTGATTATACAGACGGACCACTTCTAATACTAGCAGGTCCTGGTTCTGGCAAAACCCTGACCATTACGGAAAAGGTCGTAAACCTTGTGGATGAAGGATTTTCTCCTGACCGGATACTTGCCCTTACCTTCTCTGAAAAGGCCGCAGGAGAGATGGAGAAGAGAATTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 28241-30542 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBU01000009.1 Methanohalophilus euhalobius strain DSM 10369 Ga0139039_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 28241 37 100.0 34 ..................................... TTTATCCCGCCCCATAGGGACAATTACCTATATG 28312 37 100.0 39 ..................................... TCATTTTTATTATTTGCAGGAAATACCCAATTCTTAAAA 28388 37 100.0 36 ..................................... TTATTTCTCCAGGATTATCGCATACTTCCAGGACAT 28461 37 100.0 38 ..................................... CATGTTAGCCCCGTCGAACCAATCCATAAACCAATATT 28536 37 100.0 38 ..................................... TCAACGTATAATTTCTACTTACTAATGTATTTCTCAGG 28611 37 100.0 39 ..................................... TGTCTACATCTGCGGATACATATAGTTGATGTGTGTCTC 28687 37 100.0 37 ..................................... TTACCATATGAGCGCTGAAACCAGCGTCTGCATTCGA 28761 37 100.0 37 ..................................... AACTTGACAGTACTAAACTGTACTTCATTATTGACAA 28835 37 100.0 40 ..................................... TATGGATCGCTTTTAAAATGGCCTGTTCACATACTGCCGA 28912 37 100.0 39 ..................................... TTCAATTAGTCCCTGCAACATCCAGAACATAAGGTTAGT 28988 37 100.0 38 ..................................... ACTAATAAACAAGTTGATGAAGGTACACTTTCAGAGGA 29063 37 100.0 41 ..................................... ATTTTCGGGAATGGTACCTTTGTTGTTGCGGTTGCTTTTTT 29141 37 100.0 40 ..................................... ATCCTGTTATAGAGACTTTATCAAATAGATATGCTGTAAT 29218 37 100.0 39 ..................................... TATACTGGAGAAAATTTGACAAGAGTTGCAATTACATCC 29294 37 100.0 41 ..................................... TTAAGTGCTTCGACAATTGGAGCAATTCTTGCGCACTTCTG 29372 37 100.0 40 ..................................... AAGGAAGAAAGGTGCTGAGGTGAGTGATGCTGAGATTGAG 29449 37 100.0 39 ..................................... CCTCGCCCAGATTTTTCATGGTCTTGCGGAGTTTTTCGA 29525 37 100.0 41 ..................................... ACACAAAAAACAAGATATTACAATGACCGTGGAGAAGACGT 29603 37 100.0 37 ..................................... GATAATAAAAGGTGTTGCAGGAGAATTCTATCCATGT 29677 37 100.0 39 ..................................... GCTATCTCTTTAGCAGCATCAGTTTTAGACATTCCTAAT 29753 37 100.0 39 ..................................... ACTTAACTTAAAGGATACTGCACCATCTGAACCTGTTGT 29829 37 100.0 42 ..................................... AATAGATTTTCACTTACCCCGCTCATTCCAATCGCCCGATTA 29908 37 100.0 42 ..................................... CCTCGTACCTCATGTAAAGCGTCAAGATACCCTCTCATGAAT 29987 37 100.0 34 ..................................... CCAAAGTATTGATTTTTTTGTCTTGGAATTGTTC 30058 37 100.0 39 ..................................... CGATGACCCCTGCAAGGTGATCAATTATTTTTACATTAG 30134 37 100.0 37 ..................................... ACAACAGCAATGGTAATGTTATTGTTTCTGCAAATTT 30208 37 100.0 37 ..................................... ATATATTTCACACGCTGAGCATTTACAATTTCAAAGA 30282 37 100.0 39 ..................................... AAATCAAAAGACGGCAAGACTTACGGTGTAGATGAACAG 30358 37 94.6 38 ....................A..T............. ATCTTAAAAACATTTTTTAAGGTTTGTGGTCTTCGTGT 30433 37 94.6 36 ....................A..T............. CGATAGCTACAGCTGACCTGTCATCCGGATTCATAT 30506 37 89.2 0 ....................A..T.......AA.... | ========== ====== ====== ====== ===================================== ========================================== ================== 31 37 99.3 39 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : ATGGTTTAATGAGAATTCAATATAGTGTTTTTGCAGGTGAAATTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTATTTGACAGTAATCTAGCAGAAACAGATAATATCACAGTATTTCCTTTATGCAGGGAATGTCTGAATAATGTCCTTACATTAGAACCATTGCCTCAGGAAATCAAGCATCTGTCATTATGATGTACAGACCTTTATAAGGGGTTGAGCAAAAAGGAGGTCTGTACACACATATTATCATTTTTAGGCATCAATGATAGAAATCTTACCTAAAACGGACATCGACTTTATATTAATATTTTTTTGATGATGGCGTATGGTAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACAACGCCTCTTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : CATTACTTCCTTTTATGCAATTTATTTAGCCTATGTAAAAAATTGCTCAATAAATATAGGTGGATTAACATGGAACTTAATGAAAAAATGTATTATGCTTGCTCATTATGCAGTACAGAAAATAAGGTTGTATGGCACAAACCAAAAACGAAGGTCTGGGAAGAACACAAACGATACATCGATTTAGATCAGACAAATTCATAGACTCCACAATACTTTTGGTGTCTAAAACACAATCGTGCACATTCATTGAAAAGAGAATGCCTGAAACATAAGGCTACAATTACTTTCAATGGTAATGAAGGAAATAGGGATTGTAATACAAAACAATTATCCCATAACGACACACTTGATGAAATCAGAAAAACCGTTACTGAAAAGTCCAATCAATTGGATTGGAAAAAGTTATTGGCAGCAACAGTCTTCCATATCCCTGCACCAGGGAATCAAGGTTGATATTACCCGACATAATATATTGTCAGCGTGATCCAGGTACAAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 22991-15786 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVBU01000004.1 Methanohalophilus euhalobius strain DSM 10369 Ga0139039_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 22990 30 100.0 35 .............................. GCGTGATAGGAGAAATTGGAACTGCAGAAGTTCGG 22925 30 100.0 35 .............................. TGCTGTTGTGAGATTTGATTCATAGATTTTATCTT 22860 30 100.0 37 .............................. TGAGGTTGGGTAAGGAAGCACTTTTCCGCATTCTTTA 22793 30 100.0 36 .............................. TAGATTAATAGAGCATATATGCCTGCCTCAATCATA 22727 30 100.0 36 .............................. CATAGTAGGTATCGTCAGCAAAGTGATGCTGACAGG 22661 30 100.0 35 .............................. CTTGTGACACGCATCACACCGTTTGGACCTCTCTT 22596 30 100.0 36 .............................. TTAACAACATGTTCCAACGTTGTTGGTCCGGAACTG 22530 30 100.0 37 .............................. TTAATTCATTAGCCGCAAGTTCACGGACTGCGGTTTC 22463 30 100.0 35 .............................. TAAAATAAGAAGGAATGGTTAAAATGTACGACAAA 22398 30 100.0 35 .............................. ATAATAGGAGGCCAATATAAGAAAGAGCAATAAAC 22333 30 100.0 37 .............................. TAGTCATAGTTACATCCTGTGCAATTGCGAGATCAGC 22266 30 100.0 36 .............................. GGACATTACATTATTACCCGTGATAGAGCCACATTC 22200 30 100.0 37 .............................. GTGGTGGAACTGGCACTCTCTGGGTAGGACTTGCAAG 22133 30 100.0 37 .............................. GTTGGTGTAGGGATATTATCTAAGGAATGATATGTAT 22066 30 100.0 37 .............................. GTCACAAGCGGGGCAGCAATCACAAAAGGACAACTCA 21999 30 100.0 36 .............................. TTGTGGCCGCATATATCGACACTACCGGACTGACTG 21933 30 100.0 36 .............................. CATACTAATCGTTGGAGATCCGGGTGTAGCAAAGAG 21867 30 100.0 36 .............................. ACTACAATTGAAGGTAGCCTCGATGCCAAGAACATT 21801 30 100.0 36 .............................. AGAGACAAACTAACGATGTTTCTCAACAATGAAAGT 21735 30 100.0 37 .............................. TCTCAATGATTTTTAGAGCCTTGCCGGCAGGATCTTC 21668 30 100.0 36 .............................. GCCGGATGGTTTGAAGTCTCCAACGAGGACATGATG 21602 30 100.0 36 .............................. TACTTACAGAGCAAAAATCGTGACAAAGCAAAAATC 21536 30 100.0 36 .............................. TGCGATATGGGGTAACATTTGGAGATGTGTAGTAGA 21470 30 100.0 36 .............................. TTCTTCGATAGGTACTTTCATGAATGGGAAAGCATA 21404 30 100.0 36 .............................. CCGGGAAAACACCCGTGACCGGAGGAGTTGCATATC 21338 30 100.0 36 .............................. CCAGCTTTTTTAGTATTATTATTCGCATCAATTACT 21272 30 100.0 36 .............................. TTAAACAATAAGGAGATAGGAAAATATGCAAAACAA 21206 30 100.0 36 .............................. GGATTTTATATTATTGCCCGTGATAGGGCCACATTT 21140 30 100.0 37 .............................. ATAAAATAAAGGAATGACTAAACATGAATGCAGAACA 21073 30 100.0 36 .............................. TGATATAGGCGAACAGAATGTTTTGCTCTCCGGCGG 21007 30 100.0 37 .............................. ATTTTCTCCAGTCCTTCAACTGCGAAATACAGGTATA 20940 30 100.0 36 .............................. AGTGACTGGGTAAGAGAACAATTATATATTTTAATA 20874 30 100.0 35 .............................. GTAAATGTCTCACCTGTATTTGCTACTCTGACAGT 20809 30 100.0 35 .............................. TTTACAAATCCGCCTTTATAATATTCGATCTTCAT 20744 30 100.0 35 .............................. TTAGGCAACTCTACATCATTGGGAAAGGCATCTGC 20679 30 100.0 36 .............................. TTCTCTACTGCTGTTCGGATCTTTTGTTCGTTAAAC 20613 30 100.0 36 .............................. ACAGGTAGACCAGTCTTTTCCCCTATGTACTTAAGC 20547 30 100.0 36 .............................. TTCATAGTCCCTTTTTCAGTATATCTTTCGGTTTTA 20481 30 100.0 35 .............................. TGGTATTGACCCATTTCGTCTATAAAACCATCTTC 20416 30 100.0 36 .............................. ATCTACAAGCAAGAATTTGAAGTTGTTCGTAATGGT 20350 30 100.0 36 .............................. GTTTGAATAATTTTCATACGGATACGTAATGAGATC 20284 30 100.0 38 .............................. CAACTTGTTTCAATTGTTCACCGGGCGACTGCTTGCGG 20216 30 100.0 37 .............................. TTTGCATCATATACACTGACCCCCATCTCCTTGAGAA 20149 30 100.0 36 .............................. ATCTCTCATGATGTAGATTTTGACGAACTCTCACTG 20083 30 100.0 36 .............................. CGATAAAGGCGCTCCACCACCGCCCAGATAAACATA 20017 30 100.0 35 .............................. TCGATTTGTATTTGGGAACAGACTGTTAAAATCTC 19952 30 100.0 38 .............................. GCTTCAATCCACAAATCCCGTAAGCATCCGATGCTATC 19884 30 100.0 35 .............................. GATTCATACATTTTCGTACCGTCAGGCTTAAAAAA 19819 30 100.0 41 .............................. GCCGTTTCTGAACGTGAACTCGAGTCTGCACTCTATGCAGC 19748 30 100.0 37 .............................. TCTATGAAAGAGGGGAGTTATAATGAGTGAAGATATT 19681 30 100.0 34 .............................. TAAACCCGGGTGTGGGGTAGGTATATATTTTAAT 19617 30 100.0 33 .............................. GCTCCTGTGCCTCTTTTGCACTCATTCCAGGGA 19554 30 100.0 38 .............................. AGTTTCAGAACGGCTTTTTCTATATCCGTGGTTTTTTC 19486 30 100.0 42 .............................. GTAGGTAGATTTGAAGCCTGGTTCACAAATTTTGAATTACGG 19414 30 100.0 35 .............................. GATATTGCTTTGCCCTGTGCTGGAATTGATTGCAT 19349 30 100.0 35 .............................. AAAATATCAATGCTACGTATTCTTACGACTACAGA 19284 30 100.0 36 .............................. CTGAGTGAGTGGAGTGATCATACTTCTCTGTTTGTT 19218 30 100.0 37 .............................. AAGTGAAACTAGGTGTAGCATCCATGCCGGTTGGTGG 19151 30 100.0 38 .............................. ATCATAGTCATTGCTTTCCCGCCGCCGATTTGCTGATA 19083 30 100.0 38 .............................. TCTATATATCCTTTTGAGCCTGCAAAATTCACTACAGT 19015 30 100.0 38 .............................. ATCCGGGTGTCTATCCAATGCTCATAGTCCATTTTATC 18947 30 100.0 38 .............................. TGGAATTTTTGCGCTGGCCATGCGTGCGCACAAGGAAA 18879 30 100.0 37 .............................. GAAAGCCTGTCAGACCTCTCAAAATCTGTGATGTAGA 18812 30 100.0 35 .............................. CAGGCCAGCAGTTCGAAGAGTTGAGGAATGTGGCC 18747 30 100.0 36 .............................. CTTCTGGAAAAAATGTCAGAGAAATACGAGACTGCC 18681 30 100.0 34 .............................. GATTTTACGAAGTTTTCTCAATGCCGGGGCGCTT 18617 30 100.0 39 .............................. GACCGAGACAGGGTATAACAAAATCGCCATCGCAATATA 18548 30 100.0 37 .............................. CTCATATAATCTTCATCCCAGGGGCCTACCCTGGATG 18481 30 100.0 36 .............................. TCATTTTTGCACAACCATTTTCATGGCTCCTGCTAG 18415 30 100.0 37 .............................. GCATGAGGTGCGTGGATATGTCCGCAGGGGCATACAG 18348 30 100.0 39 .............................. CTGATAAATTTACCATCCTCAATGACCCCGGATGTACCG 18279 30 100.0 39 .............................. TATGCAATTGCATGTATGCTGTATCCCCCTCTTCTCATA 18210 30 100.0 35 .............................. TTTGCACAACTCAACAGACAACTCCGCAAGTTCCT 18145 30 100.0 40 .............................. AGTTGCTCGAACGCCTCGTACAGCATGTGCCGGGCATATG 18075 30 100.0 36 .............................. CATAGTAGTATATGTAGTATAATAATGCTACAGGAG 18009 30 100.0 36 .............................. ATACATTCAGGAAATTGGATCCAGAAGAACAAAAAC 17943 30 100.0 35 .............................. ACAGGACACTCATTTGTGAAGATCCTCTGTTCCAG 17878 30 100.0 37 .............................. ACGGAATTGACTATCTTCAGCAATTGGCTGGAAAAAT 17811 30 100.0 37 .............................. TTTTTTGGAGGAGTGACTGACATGGTGAGATAATGGC 17744 30 100.0 35 .............................. AAAAAAGAAAGGGCAGCAGTGAAAATGTCTGCCTC 17679 30 100.0 36 .............................. GTACATGAAGCCCGTACATGAAATTATCCCGGAAAT 17613 30 100.0 36 .............................. TAGATCAGCGCAGGGGATTGTTAAAGGGGTTAATGG 17547 30 100.0 45 .............................. AGAGAATCCATACTGCAATGGGACTTTCCTTCTGGAGCATCAATC 17472 30 100.0 38 .............................. CTTTATCCGGATTCACTTCTGTGGTCCTGATCCATACC 17404 30 100.0 38 .............................. TGGACATGTCTGGTCCGGACGAGTACAGGCCACCTTCC 17336 30 100.0 35 .............................. CAAATCTACACAAAATCAAAAGACGGCAAGACTTA 17271 30 100.0 36 .............................. GTTTGTGGGTGTATCGATCGCACCTGAAAGTGATCT 17205 30 100.0 33 .............................. GAAGACAACTATCTTCAAACACTGAAAAAGGCG 17142 30 100.0 37 .............................. TTGCGAGTATCGGGAGCATGGCTTCAGTATTCCTACC 17075 30 100.0 35 .............................. TTGTGATACTACAGTATGGCAAATCGTATAACTGC 17010 30 100.0 34 .............................. AAAAATCAAATCAATGATAGACAACGATTATATT 16946 30 100.0 36 .............................. TTTGCAGCGTCAATAATGTCCTGTCCTTTATACATA 16880 30 100.0 36 .............................. GTTAACGCTTGCGAAAAACAAGGATTGTAATATTCT 16814 30 100.0 37 .............................. AAGATCACGTCATACAAATCTAGGTCGTTGAGATGTA 16747 30 100.0 37 .............................. ACTGGATTTGTGAAAAGAGTTAAGAAGAAGTGGTGGG 16680 30 100.0 35 .............................. GTTGAACATTTCCACTTACATTTCCAGTTGAATAA 16615 30 100.0 36 .............................. CTCAAGGGGCTGAAGAGGCTTTCCACATTTCTTACA 16549 30 100.0 36 .............................. TGGCGCTCGTGAACTTTTCTGTGATTCTTCTTTAAT 16483 30 100.0 37 .............................. CAGGCCAGTTGTGTCTTCAATTGTCTCTTTCAACATG 16416 30 100.0 38 .............................. CACAATCTGCAATAAGGGACGAGGGGATTTTCTCCCCC 16348 30 100.0 39 .............................. ATTGTTGTGGGGGCGTATATCTCCGCCCCGCATCTACTC 16279 30 100.0 35 .............................. AATTTCGTTTAATGCACCGCGTGATTGATAATAAA 16214 30 100.0 37 .............................. TATATCATCCTCGCTGCAAAACCACGCCGATTGCGGG 16147 30 100.0 35 .............................. GTCTTTGCTGTTACTGCATTGAATCTCAATGTATT 16082 30 100.0 36 .............................. GCTTTCTTTGCTTCTTTCGCTTGTCTTCTAATATCT 16016 30 100.0 40 .............................. ATCATGATTTCTCTCATGTCATGACCCCATGTAGTTCAAC 15946 30 100.0 36 .............................. GAAAATATATGTGATGTCAATTTGCTTGACCGTGGT 15880 30 100.0 36 .............................. TGATAAGTAAGCATGGCTAATCCAACACCTAAGTAT 15814 29 86.7 0 .................-......A...TT | ========== ====== ====== ====== ============================== ============================================= ================== 109 30 99.9 36 GTTATAATCAGACCTTAGAGGGATTGAAAG # Left flank : ACCACTTGTTATGTGGTGGTAATATGTATGTGATTGCTGTATATGATGTGGGGATTGATCGTCTGAATAAGGTTCGTATATTCCTTAAACAGTATCTCAATTGGGTTCAAAACAGTGTCTTTGAAGGAGAACTTACAAAAGCTGAATACATGAAGGTAAGATCGGAAGTAAAAGAACTCATTGACGAAGATTTTGATTGCGTCTTTTTTTATCATGTCAAGGATAAGAAGTATCTTGGTTTTGATGAAATGGGTGCCAGAAAAACAAATATTGATACGATAATCTGATGTTTCCATGACATTTTCGTGGATGTTTATAAAGCTACTTCCAAATTAAAGATCCACGAAAATGAGCAATTTGTATTTTGGATTTTTGCTATATTTGCAGACTATTCATAGAATTGCTATTTTCAAACAAACGCTGTCATAGAAGCAATTGCACACTTTTTTGTTGAATTATCTTCGTCTCAATAAGCCTAAAATAAGATAAAGTCTATCTTG # Right flank : TTTCATTTAGACGCTATTTTAAATGAATCAAGTAATATAAAGTAAAATTAAACTTTCTGATGTAATATCCGAACTGTATATACAGTTTTGAAGTATATTTTATAACGATAAAAACATTTATTAATATGGCCAGAGTTCTAAATATGAGGTTATTAGAAAATGGACGGGTTTGTGGGAGATCCCTTTATAACTTCCGGGTTACTTGCGATTAAATTGAATACCGGTTTCAATATTGGCGAATGCCCTGAAGATAAACTGAAACAGGCAAGTGAACAACTTGTAGAATTATATCTAACTCCTGCTTGGTCAAAGGAGTTACAATCTATATTTCCCAATAGTACTTACATACAAAGTGCAAAAAATTATGATAAGAAAGGCAAATCAATAGAATTCTTGCATGATCTTATAGAGGGCTTAAATTCTGAAAACAATAATGATGGGTATTGCGTATTTTGTGGCAGCCCTGCACATCAAAGAAATGATGGCAAACCATTTGTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATCAGACCTTAGAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //