Array 1 1661383-1658977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058315.1 Treponema parvum strain OMZ 843 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1661382 36 100.0 29 .................................... TCAACAGAAAGAGATGTTTGAATATCAAA 1661317 36 100.0 30 .................................... TCATCGATAACAATCCTCAACTCGGTATCT 1661251 36 100.0 30 .................................... AAAAAAAGTTTGTATATTGTTAACATTCAT 1661185 36 100.0 30 .................................... CAATGCTCTCCCTTTCATGATGTATCAGTC 1661119 36 100.0 30 .................................... TTACATTGGTATAATGAATGTCGCGGGCAA 1661053 36 100.0 30 .................................... CATGTTAAATACAATGAATGTTCACCGTTA 1660987 36 100.0 30 .................................... TGATTGTTTCGATAAAAGAAGCCGCCTATA 1660921 36 100.0 30 .................................... ATGTCATGTGCTCATAGCTTTTAATTACTT 1660855 36 100.0 30 .................................... CCTTGCCGTTTTCCGCCATGATTTTATCAA 1660789 36 100.0 29 .................................... CCATAGCAAACTGCATGCAGGTAAAAATG 1660724 36 100.0 30 .................................... TCTATTGTTCTTTTATCATGCAATGCCTTT 1660658 36 100.0 30 .................................... TAAAAACTTTATCTTCATAACTTTGTACTT 1660592 36 100.0 30 .................................... TAAAGATGTGCGTGGTAAAAAGATCGCAGA 1660526 36 100.0 30 .................................... TAATCTTTGTTCAAACTTTGATTCTGACTC 1660460 36 100.0 30 .................................... AAACCGGGCTATTTCGTTACCGTGAAGATA 1660394 36 100.0 29 .................................... CTGTTTCCATGTATAAGGCAAAAATTGAA 1660329 36 100.0 30 .................................... TTTCGGATAAGACGGGTTTAAGTTTGAGCA 1660263 36 100.0 30 .................................... TGCCGGTGTCGGTGCAAGTGATAGCCTTTT 1660197 36 100.0 30 .................................... CGCGCAGAGGCTTCGACACTATCACAGCCA 1660131 36 100.0 29 .................................... ATGGCGTTAAAACTAAGAGATCGATATGG 1660066 36 100.0 29 .................................... AAGTATTTATTCATCATTTTCGACTGCTA 1660001 36 100.0 30 .................................... TCTTATAAACAGACAGTTCGACAAGGTATT 1659935 36 100.0 30 .................................... TCTGAACAATAGTCCTAGCGCTATGAGCAG 1659869 36 100.0 30 .................................... TCTAAGGTGCAGCGGCTGTATGGTATCGGT 1659803 36 100.0 30 .................................... TGCGTGATTGCGGAATTCGATAATCATCGG 1659737 36 100.0 30 .................................... ATGCTGTATGTTGAAAATAGAATAATAGCA 1659671 36 97.2 30 ...................T................ TGGTCTTGATTTTAAAGACTTTGAAAAACT 1659605 36 97.2 30 ...................T................ TACAGCGTTTGGCAGGAAAGAAATGCCCGT 1659539 36 97.2 30 ...................T................ CTCTGATTACTTTTGCTTTAAAGATAAAGA 1659473 36 97.2 30 ...................T................ TGAAAATATGTTTTCTCGTCGTCTTGATTT 1659407 36 97.2 30 ...................T................ AGGGTGTTGCAGCTTCAGGGGGCGCGGCGG 1659341 36 100.0 30 .................................... TAATACACCGTGCAAAAGTTCTTTTGTTCG 1659275 36 97.2 30 ...................T................ AGCGGTATATATTGCCCGTTGTATACTTGA 1659209 36 94.4 30 ...................T........C....... ACACGCGGCATCTGCAAACGCTTCATATTT 1659143 36 94.4 29 ...................T........C....... TAATATCCTTTACGTTTTTTAGTGCATTA 1659078 36 97.2 30 ...................T................ TATGCTTGGTGCAATTTGGCACACCACGAT 1659012 36 94.4 0 ...................T........C....... | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.0 30 GCTATTTTACATCAGAATTCGAAATCAAACCACAAC # Left flank : TTCATTAGTAAAAGTGCTTACGGAAGAATTCGAAAAAATGGCCTTACCTGTTTTTATATAGCTATGAGTTTTGAACGGATAAACGCTTATAAGATAATGTGGATTTTTTGTTTGTTTGATCTGCCGACAAATACAAAGCCTCAGCGAAAGCGCGCATCGGAGTTTAGAAAAAAACTCTTGGAAGACGGATTTGATATGATGCAATTCAGCGTATATAAAAGATTTTGCGGCAGTAAAGAAGCTTGCGCGGTTCACGAAAACAGAATCAAACAGTGGCTGCCGCGGGAAGGGACGGTGAGTATTTTAAAATTTACCGACAAGCAGTTCGGAGAAATACTGACATATATCGGTTTGTCCCCAAAGCCTAAAGAAAAAGCGCCTAAGCAACTGGAAATGTTTTAAAAACTGAAAAAAACAGATCGAGTTCTCACCCGTTTTCCCAGTTTTTTTGAGTAAAACAAGCATAAACCCTATATTTAGCAAGCAATTATAGAGTTTAT # Right flank : ACTAGCAGAGCTTTTATATTTGATGTTTCCGCAACCTGCCACCGATTGCGCATCAAGTAATGACATAGATAAAATAAAAAGAGCATACTGGCGGGGCAGCGTCGATAGTTAACAACCCGAGTATTCCAGCCCATAGTACGCTCTTTTCATGTATAACGATAACTCTGTTTTTCTGATTATCAATAGCTTTTTAGTTTCTCTGTAATCAGGGCTGCAATAGTTTCAAAGTTCATATGAAAAGTAATGATCAAAAAAAACAGCGAACCTTGGATAATTTTTGAACAGCCTCATGATTTATCGCCTGTCCAAATTATTTTTTTTGAGCCAATCCGAAAGCAGATCGGCGATTTTAATATTGTTAAGATCCGAAAAGATAAAGTGCGTATTTCCCGTAATACCGATTTCGGGAAGGTGGACCACCGCCGCGTTGCCGCCGTATTTATTGATCGTCGCGGCAAAAGAACGCGCCATGGCAAGTTCGGCGCGCCATTGATCCTGTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATTTTACATCAGAATTCGAAATCAAACCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //