Array 1 24575-25030 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000002.1 Nocardiopsis potens DSM 45234 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24575 29 96.6 32 ............................T CCGGAGGCGCAGTCGATCTCGGGCCAGGAGAA 24636 29 100.0 32 ............................. GCGTGCACCGAGGTGTCGGCGACCCGGGCCGG 24697 29 100.0 32 ............................. CCCCGGCCGGCCGCGTCCGGCGCCCGCTGCGG 24758 29 100.0 32 ............................. CCCCGGCGGATGCGGAGCCGCACGGGGCCGAG 24819 29 100.0 32 ............................. CCCCGGCGGATGCGGAGCCGCACGGGGCCGAG 24880 29 100.0 32 ............................. CCGCGGCAGTAGACGTGGAGCTGCACGTACTC 24941 29 100.0 32 ............................. TAGCCCTTGCGGGCGTCGGCGGCCTTGGCGCG 25002 29 79.3 0 ..............T.......C.GCT.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTAAGCCCCGCACGCGCGGGGATGAACCG # Left flank : CACCGCGATCTGCTCGTCTCCCTCGAGGACGCGCTCGCGGACAAGATCGTGGTCGACTGCGTGAACCCGCTCGGCTTCGACAAGAAGGGCCCCTACGCCCTGCCGGTGGAGGAGGGCAGCGCCGCCCAGCAGGCCGAGGCCGTGCTGCCGCGCAGCCGGGTCACCGCCGCGTTCCACCACGTCTCCGCGGTCGTCCTGCTCGACCCGGAGGTGGACGAGGTCGACCTGGACGTCCTGGTCCTCGGCGACGACCGCGAGGCCACCGACATCGTGCGCGCCCTGGCCGCCCGGATCTCCGGCGTCCGCGGCATCTACGGCGGCCGCCTGCGCAACGCCCACCAGGTCGAGGCCTTCACCGCCAACATCATCGCGGTCAACCGCCGCTACAAGGCCCACGCCGGCCTGCGCATCACCGACATCTGACCGCCCGGCACCCCAGGGGGAAGGGGCATGCCCGATCACACGAACGTAACGCTCCACAAAACCGCAGGTCGCTCGCT # Right flank : TGTTCGCCCTGTCTCGGAGGAGGTCTGTGTGCGGGTCATGACCTGGAACGTCTGGTGGCGGTTCGGGGAGTGGGAACAGCGGAGGGAGGCGATCCTCGCCGAGTTGCGGAGGCGGCGACCGGACGTCGTCGGGCTGCAGGAGGTGTGGCAGGCCGACGGGGAGAACCTGGCCGGATGGCTGGCCGAGCGGCTCGGCATGCACTGGGCGTGGGCCGAATGGGAGCGGCCGGAGCGGTGGCACGCCCGCCTCGGGGCCGAGGTCGGGATCGGGGTGGCGGTGCTGAGCCGGTGGCCGGTCCTGGAGCGGGCCGTGGTGCCGCTTCCCGGGGCCGAGGGGGCGGACGACGGGAGACTGGCGCTGCACGCCCTGGTCGATGCGCCGGAGCACCCGGTCCCGTTCTTCACCGCGCACCTGGAGCCGGCCCCGGACGCCTCGGCGCTCCGCTGCCGCCAGGTGGCGGCCCTGGCCGGGTTCATCGCCGAGCACCGGGAGGCCTCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 41232-41442 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000062.1 Nocardiopsis potens DSM 45234 contig_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41232 29 100.0 32 ............................. GGGGCGGCGTCCACCTGCGCCCACGGGTTGTC 41293 29 100.0 32 ............................. CCGAAGAGTACGTTTCCGGGATCCTGGAGAAG 41354 29 100.0 32 ............................. GAGGGCGAGGCCCGCACCCACCTGGCCGTGCT 41415 28 86.2 0 .....................G.-.A..T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGCTGATCTCCAAGGTGGGCGGGGCCTCCGGGCCGCTGTACGGCTCCTTCTTCCGGACCACCGGGAAGAACCTGGAGGGCGCCGAACCCGGCCTGGCCGAGCTGGCCGCCGCCCTCCGCGCCGGCCTGGAGGCGGTACAGCGGATGGGCGCCGCCCAGCCCGGCGACAAGACGATGGTCGACGCGCTCTCCCCCGCCGTCGCCGCCCTGGAGCAGGCCGCGGAGAAGGGCGCGGCGCTCGCCGAGGCCGCCCGGGACGCCGCCGACGCGGCCTACGACGGGGCCCAGGCGACCATCCCCCTGCAGGCCCGCAAGGGCAGGGCCTCCTACCTGGGCGAACGCAGCATCGGCCACGAGGACCCGGGGGCGGCCTCCGCAGTGCTCATCTTCCGCTCCTTCGCGGAGGCCACCGCGACCTGATCAGGAGCCCCGCCCGAACCGGCGCCAGGCGAAGTTGCGCGAACCGGCCTCCCCGCCAGAAAGAACCCCAGGTCAGAGAGA # Right flank : TCTCGGTCGGTCCGCCGTGTCCGGTCAGTCCTCTTCGGTGAAACCCGCCGCAGCCTTCGCGACCGCTTCGGCGTCGTCTCGGGTGAGGGTGATGCCGAAGACGTCGCGGATCGCCTCGGGGACCTCCTCCGGGGCGAGGTCGCGGCGGTCGACGGTGCCGTCGGGGTGCTCCTCGGTGAGGGCGGTGTCCGTCAGGCGGCGGCGGACCGACGCCTCGGTGTGCTGGACCATCAGCCGGCCGGTGAACGGGGAGCGGGGCGAGGTGGACAGGTAGTGGCTGAGGATCGCGTAGTCGCCGCGGTAGCGCGGGTCCTCGGTGAAGCCGTAGAGCTCGTCCCAGGTGTCGCCGGTGCGGGAGGACAGGGCCCAGACGCCGTCGCCCTCGTCGGTGAGGCGGTAGGTCCACTCGTCCTGGGCGGCCTCGGTCTCCGGGGCGCGCAGCGGGACCGGGTAGAGCGGGCCGCCGCCTCCGAAGCCGGTGTCGGCGAGCACGGCGCCCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2316-1859 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000067.1 Nocardiopsis potens DSM 45234 contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2315 28 96.4 33 ..............T............. GATGATCGGGGCGTGGTCGGCCGGGCCGTGGGG 2254 28 96.4 33 ..............T............. CCTCGACACCGACACCCGCGCCAACCTCGGCGA 2193 28 96.4 33 ..............T............. CGCGCGGATTCCAAGGCCCCGTACCTGCGCATC 2132 28 100.0 33 ............................ CCCCATCGGGGGCTCCTCCGGACCGCCGGGCAG 2071 28 100.0 33 ............................ CCCCATCGGGGGCTCCTCCGGACCGCCGGGCAG 2010 28 100.0 34 ............................ CACCCGCCTGAGCCGCTGCCCGGAGTGCCAGCAG 1948 28 100.0 32 ............................ TCCATGCACGCTCGCGCCCCGCGCTCACCGCG T [1922] 1887 27 85.7 0 ...........G.........-..G..G | CC [1864] ========== ====== ====== ====== ============================ ================================== ================== 8 28 96.9 33 GTGCTCCCCGCATGCGCGGGGGTGAGCC # Left flank : GGCGTCCACCGCCCGGATGAGGCCGTGCGCGACCGCCCCGCCTCCTACGGACGCGACATCCGCTACGAACTCACCGAAACCGGTCGGACAAGGCTCCGCGAACTCGGCATCGACGCCGACCGGCTGCCGCCCCGCCGCCCCGCCGTGCTCTACTGCGTCGACTGGAGCGAGCACCGGCACCACCTGGCCGGCGGACTCGGCGCGGCGCTGACGGCCCGACTCTTCGCACTGGACTGGGTGCGCTGGGGCACGGCGCCGCGCGTCGTCCACGTCACCGACAAGGGGGCGGCGGGCCTGGAGCGCTCGCTCGGTCTGACTCTCCAGTGGTAGCGGCCCCGTCCGTTTGGGAAGTGATTCTCCCGATCCGCCTCTGACCGCACTCCGGTACTGCGATCATGCCGGAGGAGCCGTTCACTTCGACCGAGGACAATCGAGGACAGGGTGAGCCGTCAAAAACATCAAGTTTTGATAACGCCCTGCATCGCTGCAGTTCGTGAAGG # Right flank : ATCCCGAGTTGGTCGCTCGTGGGCGCTGAGTTTTCGGTCTGGTTGAGGAAGGTCGCCAGGATGGTGTGCTCGCCGTATAGGCTCTTGAACTCTTTATTCTTGTCCTCGGGGGAGCCTTTGGGGCATTTCGAGGAGTCGGAGTGGATGGCCACGGCGTTGCTTTTGTTGAAGTCCTTTTCGTTTCAGTGCCCTTAGTGTCGACCTCCGGTTTCGTCTTCTTCTCGACGGCGTTGTGGTTCAAGGGTGCCTCGACCCTGAAGGCGTCAGAGAGGAACGGCATGCGGATCTCTGAATAGGGGCCCTTTTGAGAGTGGTGTCCTTCGGGGGCGCATGGGCCTCACTGCTCTGCTTTGGAAATAGGTCGCCCCTGTCGACCTGGATGTCTCCGAATTTGCCATTGCTCACCGTGTCCTCCCGGGGGTGGGGGGAGGGGTCGTGAGAGGTTTCGTCCGGTCCGCGGTGGCGGGGCCCGCGTCGCAGGCGTCCGGAGCGCCCCTGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATGCGCGGGGGTGAGCC # Alternate repeat : GTGCTCCCCGCATGTGCGGGGGTGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13998-13480 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000067.1 Nocardiopsis potens DSM 45234 contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13997 30 100.0 31 .............................. GGGGCCTGCTGGACTACCTGGACCACGACCG 13936 30 96.7 31 .............................T GGATGGCCCGTGCGGTGAGCACGTGCCGATG 13875 30 100.0 31 .............................. GTCCTAGAAAAAACCGTCTCCGACGGCCGCA 13814 30 96.7 31 .............................A CCTCTGACACAGCCGCCGCTGAACTCGCCCA 13753 30 96.7 31 .............................G GGTCGGCACCCCTCCCCCCGCACCTGGTCCG 13692 30 100.0 31 .............................. TGTGCTTCTCCCCCCAGGGGGATGCGCGCAT 13631 30 96.7 31 .............................G CTCGGGGGTCTCCTGGGGTGTGGGGTCGCCG 13570 30 93.3 31 .................A...........G AACCCGGCGCCCACGGTGTAGGGCGGGCTGG 13509 30 73.3 0 ..................AT..A..CGAAG | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.8 31 CTCCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GAGGACACCGAGGTAGAGGATGCCCCCGACCAGGTGAGCCTGCAGGGCGACGGCGGAACCGAGATCGAATCGGGAATCAACCACGGGGTGATCTGGTGACGGTCATCGTGCTGACCACCTGCCCTGCGGGCCTGCGGGGGTTCTTGACCCGGTGGCTGATGGAGATCTCGGCCGGGGTGTTCATCGGCAACCCTTCGGCCCGCATCCGGGAGGCCCTGTGGCGCGAGGTCCACGCTTACGCGGGCACCGGGCGCGCCCTTCTCGCCTACAGCACCAACACTGAGCAGGGCTTCACCTTCGAGACCCGCGACCACAAGTGGAGACCGGTCGACCACGAGGGCCTGACCTTGCTCATGCGCCCCCACCGCGAGACCGGCACCGAGCCGCAGACCCCTACCAAGGGCTGGAGCAAGGCCTCAAAGCGCCGCCGTTTCGGAAAGCGGTAGGGAGAAGTGGTTCGAAACAGCCTTGAGAGCTTGTGAAACACCAGGTCAACGAGT # Right flank : TGCGGCAGACAGGGCGCTCGCGGCCGCGGGCGCCCTTTCCAGGCGCAGGCGCTTCCCTGGGCTCCCCCGACCGCCTAGGTTTGGCGCGTGACCGGCAGATGGCGCGCGAGAGGGTGTGCGGTGGACCAGTGGGTGGGCGGCTTCCGGCTCGTGCGGCGTCTGGGGCAGGGCGGATTCGGCACGGTGTACCTGGGGGAGGACGCCTCCGGGCGGCGTGCGGCGGTGAAGCTGCTGCACCCGCATCTGGCCGAGGACGCCGACATGCGCGAGTACTTCGCGCGGGAGCTGGCCAACGCGAGCCAGGTGCAGGGCTTCTGCGTGGCCGCGATCCTGGACGCCGACCCCGGGGCGGAGCGCCCGTGGCTGGCCGCGGAGTACGTCGAAGGGCCGACCCTGGCCGCGGCGGTCCGCGCGCACGGGCCGCGCCGCGGGGGCGACCTGCAGCGCCTGGCGGTCCAGACCATCACCGCGCTTGCCGCGATCCACGCCGCCGGCGTGGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25084-23325 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000067.1 Nocardiopsis potens DSM 45234 contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 25083 29 100.0 32 ............................. CCCGTTTCAGGGAGAGAAAAAATTACTAACCG 25022 29 100.0 32 ............................. TCGTCCTCGCCGACGACGACGTTGGCGGCGAC 24961 29 100.0 32 ............................. GCCCACCGCCCCCCGCAGGCGGCCGGATCCCT 24900 29 100.0 32 ............................. TCCTGAGACGCCTGGTCCGCCGCGCGGTGCCG 24839 29 100.0 32 ............................. CTGAGCAGTCGAATGCATTCGGGCCCGTCGCA 24778 29 100.0 32 ............................. CGGCCCAGGAAGTCACGTCGTGGCCGTAGACC 24717 29 100.0 32 ............................. AGCGCCCGGCTCAAGGTCGCGGCCGAACCGCG 24656 29 100.0 32 ............................. GCGACTTGCCAGGCTTCGATGCCGGGCCGCAG 24595 29 100.0 32 ............................. CGCAGGGGTGATCGTGACCGAACCGGCTTGAC 24534 29 100.0 32 ............................. GGCATCGCCGCCATCACCGCCGCCCCGCGCGG 24473 29 100.0 32 ............................. CGCGCCGTCAGCGCCTCGGCCACCGCGGCGCG 24412 29 100.0 32 ............................. ACGCTCGGCGGCGCCCTGGCCCTCCTGCGTGA 24351 29 100.0 32 ............................. ACGCCGATCACCGGCTCCAGGTCGGCGTAGAC 24290 29 100.0 32 ............................. GCAGCTGCAAAAGCCGCTCGGCGCCGCCGGAG 24229 29 100.0 32 ............................. CCGGGCCTGTACGGCCCCCTGGCCCTGTCCGC 24168 29 100.0 32 ............................. CCCGCCCGCCACGCCAACCTGGTCTCCCAGCT 24107 29 100.0 32 ............................. CCCGCCCAGACCGGCCGCACCCAACCCGGGCC 24046 29 100.0 32 ............................. CTGCACCCCGGCGACGAGGTCAGCATCGCGGC 23985 29 100.0 32 ............................. GACGCGACGGCAGCCGACCAAATGTTGTTGAT 23924 29 100.0 32 ............................. GCGCTGCGGGAGAACCGGGCCGACTTCGGCGA 23863 29 100.0 33 ............................. CCGGGCCGGGCGGGTGCTCTCCTACCGCGAGCA 23801 29 100.0 32 ............................. CGGATCAGCCGCACCCCGCTCCTGGCCACCGA 23740 29 100.0 32 ............................. CGCCCTGCGAGCCGGACGCGGCCACCAGGTAG 23679 29 100.0 32 ............................. GGCGACCGGAAGACGCCCGACGAGAAGTTCCG 23618 29 100.0 32 ............................. TCACGGATCTAGGGGGAAATAAAAAATGGGCC 23557 29 100.0 32 ............................. CGGCGGGCGCGGGCCAGCGTGTCGCGCAGCCG 23496 29 100.0 53 ............................. AGGCCGGGGCCGTCCTGGGACAGCTCGGCTCCGGGCTCAGTGCGCTCGGCGCT 23414 29 100.0 32 ............................. AGAGCGGCGCCCCGACGGCGGCCGGTGCGGAG 23353 29 72.4 0 ................G..AT.C..GGAT | ========== ====== ====== ====== ============================= ===================================================== ================== 29 29 99.0 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGGTCGAGAGTCGCTTCTGAGGGGCTTCCGCGTTGTGGGCGCCGATTCTTCCGCCCTGACGGCGTCGTCGTAGCGGTCCCTGATCGATCCCATCGAGGACACCGGCCCGGATTCCTTGGCCAGGTGGCGGGTGAAGGCCCGAAACCCGGACTGCATCCCGAGATCGGAACGGGCCGCTGTTCCCGGGGCCATTCGGCGGTCATCACGAGCGCATTCGCGGTCAAGGCCGCTATGGGTGATGAGTCGTTCGCCCACCCGACCACGCGCTGCGAGAACACGTCCAACACGACCGCAGTGCACCTTGCCTTCCCAGGGGTCCAGGCGACCCGCAACCGGCCAGCTGGGGAGCAAATGCAGAGTGGTCAGGGCAGGATGGGCATGTGGAGCCATCGGTCGTAGGGGCAGCGAGATGGTTTGGGCGCGACCTGGCCAGTTCGAGAGGAGGGAAGAAGTGGTTCAAAACAAGAGGTTGCTTGGCGAATTACGCCAGGTCAACGAGT # Right flank : TAAGGAGATTCGATGGTGTCTCCTGGTTGTCTGCGTGGCCGGATACGGACAGCAATGAGGTTTCCGCTAAAGCGCCAGAGTGGATGCGCTTGAATCTCACCATGTCCTACGAGGAGTACGCCCAGCGGCTGAGCACCGACTTGAGTGCCGCGGCGCGTTCCGCGTGGGCCAAGCACGACTGGGACTCGGGCGGCTGGCTTCCTCTGTGGCGGCACATGGGCGACAGCGCAGGCGTGGCGGCCTATCTGTGGGATGAGTGGTTGGCGCCTCAAGTCAGAGCGCGGATCGGCGAAGCGCTGCCTGATGGCGAGGCCGACGGGCGCAGGCTGGCGGTCTGGCTGGCCATGGTGCATGACATCGGCAAGGCCACGCCGGCTTTCGCCTGCCAGGTCGACGAATTGGCCGAAGGCATGCGGTCCAACGAGCTGGTGATGGACTCCGCCGAGCAGATGACCGAGCGCTCGAAAGCCCCCCACGGGGTGGCCGGGCAGCTCCTCCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12618-12405 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBB01000072.1 Nocardiopsis potens DSM 45234 contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12617 28 100.0 34 ............................ GCTCATCGCGGCTGGCTGGCTGACCGCCGACGCG 12555 28 100.0 33 ............................ GTAGCGGACCTGTTCTTGCACCTCGCACGCGGC 12494 28 100.0 33 ............................ CGAAGCTCGGTGGGCTGTTGCGCTCGGTCTGGG 12433 28 85.7 0 ............C.T.......A..T.. | C [12409] ========== ====== ====== ====== ============================ ================================== ================== 4 28 96.4 34 GTGAGCCCCGCGTACGCGGGGATGGACC # Left flank : GCACCTGACCGGCGAGCGCACGGCGGGGACGGGGAGAGCGGGGGACGGCGGGGCGGCCGGACGCCTGTCCGGGCTGAGCCTGGGAACAGGGCGGACGGAGATGCTGCGGGCCGCCGTCGAGGGCGTGGCCATGTCGATCCGGCACGCCGCCTCGGCACTGCCCGGAGGCGTCCCCGCGACCATCCGCCTCACCGGCGGCGGGGCCCGGGACCCCCGCTTCCGCCGCCTCCTCGCCGACGTCCTCGACGCCGAACTGCGCCCGACCTCCTCCCTCCGCAGCCCCTCGGCCCTCGGCGCCGCACTCTTGGCGGCCCGCGCCGCCGGTATACCTCTGACGCTCCCGCCCCCGACCGCCGAACCCCCGGTCCACCCGGGCTCGGACGTCGAGGCGTACCGAGAGCTCTACGACCGCTACTTGAGGGCGGCTACGGTGGAGGATGTGACGTCTGAGACTCGGATAACTTATCGATAACGCCCCGCAAAGTCGCAGGTCATTAAGG # Right flank : CGAACCGTTCAGCGGAGGGTCGTCCGTGCCGCCTCCATGACCGCTGCGGCGACGGTGTCCAGGGCCGGGCTGCGCAGGCGCCATTGCTGCCAGTAGAGCGGGCGGTCCAGCGGGTGGTCCGGGTCGATGTGGACCAGGCGGTCGCCCATGGCCTCGACCTGCATGCTGGGGACCATCGCCCAGCCGAGGCCGAGGGCCACCGCCTCGGCGAAGTCGGCCGAGGCGGGAACCCGGTGGCGGGGCGGGGCGAGGCGGCGGCGGGTGCGGGAGCGGATGTACCGGCGCTGCAGGTCGTCCTTGTGGTCGAAGTCGACGTGCGGGGCGGCGGCCAGTGCGTCGGCGGTCACTCCGTCCGGGAACCAGTGCTCGGCGAAGTCCGGGGCGGCGACGGCCAGGTAGCGCATGGTGCCCAGGCGCTCCACGGTGCAGCCCTGGACCGGGGCGGAATCGGCGGTGATCGCCGCCATCACCGTTCCGTCGCGCAGTAGCGAAACGGTGTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGTACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //