Array 1 316515-317863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPG010000002.1 Pseudomonas cichorii strain LCYJ26 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 316515 28 100.0 32 ............................ GAAAAGGAAATCAGTTTGTGATTGCGGTCAAT 316575 28 100.0 32 ............................ GCCTTCCATCGCGACAACCTTCCCCGCCTTTG 316635 28 100.0 32 ............................ TATCCTGGAGATCCGTGGCTGGACTGGGTTAC 316695 28 100.0 32 ............................ CGGTTAGACAGGCCCAGCTAACGGAGTGGAAG 316755 28 100.0 32 ............................ AACCTGCGCGATGCCAACCTGAGCGATGCCGA 316815 28 100.0 32 ............................ AACCTGAGCGATGCCAACCTGCGCGGTGCCGA 316875 28 100.0 32 ............................ ATACGAGGATGTTCGGAACTGGATCTACCTGT 316935 28 100.0 32 ............................ AACCTGAGCGACGCCAACCTGAGCGACGCCGA 316995 28 100.0 32 ............................ CAAGACAATCTTCATTGGCTGCCGCCTGCCGA 317055 28 100.0 32 ............................ CGAACCTCGAAATTCGGACTGTGCCCGAATAC 317115 28 100.0 32 ............................ TTACCGGCTGATATGGCCGAACACGTCAAGTT 317175 28 100.0 32 ............................ TTCTCTCCCTGCTGCGCACTCCCCCCCTTACC 317235 28 100.0 33 ............................ GGGAGGAGGGTCAAATTTCTTTCCAGGGGTTGA 317296 28 100.0 32 ............................ ATGTTGTCGACGCTGGCGGTGGCCAGCTCGGC 317356 28 100.0 32 ............................ AGTGCCGGTAACTTGACTTGAACCGCATCCTG 317416 28 100.0 32 ............................ CACCCACGGCGGCACTTCCGGGTAAACCTCTC 317476 28 100.0 32 ............................ ACGTCAACATGACGCAACCGAGCCCCCTTCGG 317536 28 100.0 32 ............................ AACGCCGAGATCAATCAGGCCATTCGCGGCAC 317596 28 100.0 32 ............................ AAGTACACATCAGCCCAGCTCGACGACATGTT 317656 28 100.0 32 ............................ ATTCAAGGATCGCGGCTTTAATTCGGCCTGGC 317716 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAATAGAAATCCAC 317776 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 317836 28 67.9 0 A..A.......AAC........C.C.CC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.0 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGAATGGGAAGTCTAGAAGGTTTGTGCAGGGTGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATGTAACTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTACCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGTTGTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 327334-326526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPG010000002.1 Pseudomonas cichorii strain LCYJ26 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 327333 28 100.0 32 ............................ AACCCATTGTTGAGGGTCGCCGCCCCAGCACG 327273 28 100.0 32 ............................ TTGAACTCTGCGTCCACGGCGGCGCGCTCTTT 327213 28 100.0 32 ............................ ATCGTCCTTGTCATGTAAGCCGGAGGTGTTCG 327153 28 100.0 32 ............................ CCATCGCGGCGCTCTACCTCCCACTTACCTTC 327093 28 100.0 32 ............................ TATGCGCCGTGCAATGGTATCGGCCAAGGTAT 327033 28 100.0 32 ............................ TGGGGCTGGCGTCTGGACCAGGGGGAGCGACA 326973 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 326913 28 100.0 32 ............................ AGCGAGCAATGCAGCGGTGTAAGCAGGCGAAT 326853 28 100.0 32 ............................ ACTCCGGCCTTGTGATGTTGCGCACCAGAAAC 326793 28 100.0 32 ............................ ATCATGGCGTCAGACATAAAAACGCCCGCCTC 326733 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 326673 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 326614 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [326588] 326554 28 89.3 0 ........T......A........A... | A [326541] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTAGCCCTGTCGCTGATAGCGGGGAAGCTGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //