Array 1 482493-481940 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBV01000001.1 Listeria sp. ILCC796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 482492 30 100.0 34 .............................. TCATAATAATGAATATTGTTCGCATATTCTTCAT 482428 30 100.0 36 .............................. TGCGAGGAATAGACCTAGAACTAGACCTAGACCTAG 482362 30 100.0 36 .............................. TCTCAAGGTGACTATCAGTACATGCAGTTTAAATTA 482296 30 100.0 34 .............................. CTCAATCGGACAAGACGGCTGACGCTTTAGAAGC 482232 30 100.0 34 .............................. CGAAGAACGCATTAGAAGTCTAGAAGTAGACAAG 482168 30 100.0 36 .............................. TTGATTAAAGGTTATTTACGTGGTTCTGAAGGCGAA 482102 30 100.0 35 .............................. GTGGCTGGGCTAAAGATAAATAGATTGCCCATGTG 482037 30 96.7 38 ..C........................... GTTGTTAGACCTGAATAGGCTACATCATCTTGAATGGA 481969 30 80.0 0 ..............CC.A....C....TG. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.4 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : TCAAGCGAAGCGGCGCCGATGTTTTCGTGACGGGAGATATTTATTATCATTCAGGGCACGACTTACTTGCGATTGATTTACCTACGATTGATGCGGGACATAATATTGAAAAAGTGATGAAACGTTATTTAAAAACGGAATTTGAAAAAAGGGCGGAAAATCTAAAGTATGAGGCTGATTTTATCATTTCAGAAGTCGATACTGATCCGTTCACGTTCTTATGAAAACGAAATTAATTTTTTTAAGCGGCAACTCAGGCAGTGGGAAAGCAACGCTCTTTCAATGTCATTAGAGTAAATTTTTAATTCAATCTGTCGATGTCTAGTAATGTGAAAATGCTGGGACATCGACAGAAATCCGGAATTCATTGCGGGAGAAGGGAAGATGGCGGAAAGAGAGACAATGACTTTCTTTTTCTACTCCATTTTTCTCCAAAAATCCGGGGGTCGACAGAAAATCACTTTTGAGCTATGATGGGAGTAAGAGTCACGAGGGTACCT # Right flank : TTAGCCAAATAAAAAGTTAAAGCACAATTAGAGCATATATTAAAACAAAACAAAAAGCATAAATCCAGTAGTGATTCCATTTCAGAAATGGTTTTTACTGGGTTTATGCTTATTTTTTATCGACCGCCGTTTTTTAAATGTTCTAATCGGGCGCGGCGTTTTTCTTCCATGTTTTTCTTTTTGGCACGCGGTAGAATGGCTTCGGCGCTTATTTGGTGGTGGCGTTCCCAAGTTGTGGGGTCATCTGGTTCGTACTGGTCTAAAAAGACGAGCACTTCTCGGATAATATGTGTTGGCGTGCTAGCACCAGCAGTTATCGCCACTTTTTTAGCATCTTTAAGCCAATCTAAATTAATTTCGCTCACATCGGCCACTCGATATGCGGGGACTAAAGCTTTTTCAATCGAAACTTGGGCGAGACGATTCGTGTTATTGCTCCGCGGGTCGCCTACAACAATTGTGACGTCAGCGCCGACAGCTTGTTCTGCAACGGCTTCTTG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 28342-28947 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBV01000003.1 Listeria sp. ILCC796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================ ================== 28342 31 100.0 36 ............................... TAAATCTTTTTAATATTTTATAACTTGCCATGTTTC 28409 31 96.8 34 A.............................. TGATTTGTTTGTCGGCATAAGCTTGTCCCTGTTG 28474 31 100.0 36 ............................... GAGGGATTTAGACCAAGCGAACGACGCGCGCGAACA 28541 31 100.0 36 ............................... GTAATTTGGATCGTATTTTGATTTAAAACTTTGAAT 28608 31 100.0 37 ............................... ACAAAAGTTGACGGTTGGGGATACGCCGAGAAAGACA 28676 31 96.8 35 C.............................. GCGCTTCTTCTACAATTTCTTTTAAAGCTTCTATT 28742 31 100.0 33 ............................... CCACATCAGAACGTATCTGGCCCAATTCGGCAG 28806 31 87.1 80 ..............C...G...G...G.... ACAGGAGGCGTATTTTTAGGGTGTTCCATACATAAAGTTTTAATCCGTGCATAAAAACTACAGTTTCTGCATTTTTGTGG 28917 31 71.0 0 .A..C..G....CA...........A.GGC. | ========== ====== ====== ====== =============================== ================================================================================ ================== 9 31 94.6 41 TGTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : CTTATCAAGGTTTTAAGATGTGGTGGTGATTTTATGTATATTATCTTAATCTATGATATTCCAAATGGCGAGGGCAGTGCGAAAGTTGCGCGTAAGATTTTTAAAACTTGTAAAAAATATTTAACACACATTCAAAAGTCCGTTTTTGAAGGGGAGGTTACACCAGCGCTTCTCATGCAACTAAAGCTTGAACTTAATCAACATATTCGAAAAGAGAGGGACTCTGTCATTATTTTTAATAGTCGCAATCAAAAGTGGCTAGAAAAAGAGTTTTTAGGTCTTGAAGATAGTAAGACATCTAATTTTTTCTAATCTGTCGATGCTAGATAGCGTAAAAACACCTGGGGGTCGACAAAAACTTGTTATCCGTTCTGGCAGAATGGATAACAAGTTTTTTTGTTTGTGAAACTAAGGAAAACTTGAAAAATAACTCCCGAAAATCAGAGGTCGACAGAAAAGCCTTTTTGAGGTAAGATGGGAGTAGGGCTCGCGAGGGTACC # Right flank : TGCAATTTAGCATTGGGAAACTAGTTTTTTTAACTACAAAACTACACATTCTAAAAAAGCAAAAATCATTAGAAGCGCAGTGCATCTGCGGAAATGATTTTTGCTTTTATGTGTGTTTGTATAGTGATTGCATATGCAATTTGTTTGCGGGGATAAAATGGGTAAAACCCGCTGTTTTTGTAATAATCCGCACTAGCTTTCTTCAAAATGAACAAAAAAGGGGATTATTTTTGCGCGATTGTTCAAAAAATGTCTACAGAAAATGGCGGTGAAGTCTGGTAAGATATTACTTGTGATGAGGAAAACACTGTATGCCTCATCATAAGTATTCCTTTAATTACAAAACGAGCTGTTCAACCTTTTGACCTAGCCATCTTATCTTGGCTAGGGTCTTTTTGTTTTTAGTTGGAATTAACCTTACTTGAGTGCCTAAAAGCACTCTTTTTTTTATGCTCAGCAAATGGCGCGTTTGCGTTTTTTGCCAATGCGGTCCATTTCGA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 45122-44898 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBV01000003.1 Listeria sp. ILCC796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 45121 30 100.0 35 .............................. GAAAAAACACTTCAACAACAGCAACTTGATCGGAC 45056 30 100.0 34 .............................. TCAATCGTTCCTGTTTCTAACCAGTAATACTCAC 44992 30 100.0 35 .............................. GAGAGCGCGGAGGTTTATGATTTCCCTCCAAACTA 44927 30 90.0 0 ...........A.....A.........G.. | ========== ====== ====== ====== ============================== =================================== ================== 4 30 97.5 35 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : AAACAACGAACTGTGGTTCCACGTCAAGGATTTGCCTGGTTCGCATGTTGTGATCCAAGACCCGAATCCCGATGAAACAGCCATCGAAGAGGCCGCCATGATTGCCGCTTATTTCTCAAAAGCACGTCTATCAAGCACCGTCCCTGTTGACGCAACGCTCGTCAAGCACGTGAAAAAACCAAACGGCGCCAAACCCGGCTATGTCATTTACGATAATCAAACGACCTATTTCGTAACGCCTGACGAAGAAAAAGCCCAAGCATTAAAAAATAAATGAGCCATTGCCCCGGTATGATGTGTATCGGGGTTTTCTGTCGATGTTCGGTAACGTAAAATTGCTGGGGGAACGACAGAAAGTTGGGAATCATTGGGAGAGTAGGAGAACGAGGAGATAATGGAACAATCAATTCGTTTTTCCATCCCATTTTCCACCCAAAAATCTAGGGTCGACAGAAAACCACTTTTGAGCTATGATGAGAGTAGAGCTCGAGAGGGTACCA # Right flank : TCTGTCGTGACCTTACTTTCAAACTCATTCGCCGCTGTTTCAATTTATGTACCATAAATCCTAATCCCATTAAAATCCCCCGCCAAAATAAAAACTCTGGTGGGGGATTTTTTATGTTTGGTTTAAACAAACGACCGGAGCTCCTTGTTTTTTGCGAATTTGTAGCTGGCAATGCTGAAAAATAGGAGGGTGTAGCCGAGTAAAATGATGATGTTTAAACTTAAATCGGCAAGTGTTCCGTTTTGTTGGAGTTTTGAGACGGCGTCCATCACCCAGTATTGCGGCATGAAAGCGGCGATTTTTTGCATGATTTCTGGCATGATAGCAATCGGAATTAGCGCGCCAGAAAGTAGCGTTGAAATCGTGAAAATCGTCGTTTGCATCGCTGAAATACTCCTTCTGCTTCCTGCGACAAAGCCGAATGCGAGTGACAGCACGACCGCCATCAGTGAGAACACTGCAAGGATTGCAAATAAATCAACGTATGCAACACCCGGATT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //