Array 1 186157-186795 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDZ02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0020 NODE_2_length_419412_cov_24.614283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186157 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 186218 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186279 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 186340 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 186402 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 186463 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 186524 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 186585 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 186646 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 186707 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 186768 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203547-206321 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDZ02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0020 NODE_2_length_419412_cov_24.614283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203547 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 203608 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 203669 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 203730 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 203791 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 203852 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 203913 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 203974 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 204035 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 204096 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 204157 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 204218 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 204279 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 204340 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 204401 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 204462 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 204523 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 204584 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 204645 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 204706 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 204767 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 204828 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 204889 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 204950 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 205011 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205072 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 205133 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 205194 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 205255 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 205316 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 205377 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205438 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205499 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 205560 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 205621 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205682 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 205743 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 205804 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 205865 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 205926 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 205987 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 206048 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 206109 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 206170 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 206231 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 206292 29 96.6 0 ............T................ | A [206319] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //