Array 1 784605-783410 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ033919.1 Parabacteroides gordonii MS-1 = DSM 23371 strain MS-1 aczIC-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 784604 29 100.0 35 ............................. ATTATCATTCAATATAGATTTGACATTCCCTGACG 784540 29 100.0 37 ............................. TTGCTTTAAACATAAGGTTGACCTCTTTTGAAGATAT 784474 29 100.0 35 ............................. CTGTAATGTAAATAATCAATAACGGGTTGTACGGC 784410 29 100.0 34 ............................. AAGCTATTTTGACTTTCAACGTATGATTTAATCT 784347 29 100.0 37 ............................. CCGGCATGCAAGGCGATTAGAGAAATACGGTGTACAC 784281 29 100.0 36 ............................. CTATTTGCCCGAGATCATCTAATATGATCGGGTAAT 784216 29 100.0 36 ............................. GATAGTTCGCTGCTGTCCGGCTTTGCAGTTTAATAA 784151 29 100.0 35 ............................. CTATTGATCTTTCAAATGATATATAGTCCCGCATT 784087 29 100.0 39 ............................. TTACTCTCTGTGATCTTAATTAATTCTTCCATGATAATT 784019 29 100.0 36 ............................. CCAAGTTCGCTCAACTTTTTCCCCGCAAGGGTCAGT 783954 29 100.0 36 ............................. GAACAAAAGGAGTATAGGAGACTGTTATCTCCTGAG 783889 29 100.0 36 ............................. GCTATCAATCTCTGATTGAATTTCTGCCTTTCTTGT 783824 29 100.0 37 ............................. CCTTGAATCTGCCCGCAATAGCAGGAAGTAATACAAG 783758 29 100.0 34 ............................. CTCATAAGGCATATCAGATGTAGGTCCTTTAGGA 783695 29 100.0 34 ............................. ATAGACCAGGTTACTTTACCGGCTTCATTGTCTC 783632 29 100.0 36 ............................. TGTGTTTTTATCTGTTATGCGAGGAGCTCCAGGGGT 783567 29 100.0 34 ............................. TTACCTGGATTATCTTTTCTCGTATCATAATCAA 783504 29 100.0 37 ............................. ATGTATCGCGGGAAACGATGGATCCCGTAAAAGCCTT 783438 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 100.0 36 GTATTAATTGAACTTAGTAGAATAGAAAT # Left flank : CTTTTAAAATGTATTGGTAATGTATGTGATCTTAGTTTATGATTGTGGAGAAAAACGGGTCGCGAAGATGTTAAAACTTTGTCGGCGTTATTTGAACTGGATCCAGAATTCTGTCTTTGAAGGTGAGATATCCGAAGTTCGTCTAAAGGAGTTGATAATGCAGGCAGAAACCTTTATGGATAAGACCTGCGATAGTATCATTATTTTTAAGAATGCTTCAAAAGTGACAATGGATAAGCAGATTGTAGGTAAAGAATGCAGCTCTATTGATATATTCCTGTAACAATAGATATTTGTCGATCCTGTAATTTTTGAAATATACAGTGGTTGAAAATATGAAATAAGCTCTTTGACTTGTTGATTTATAGCTGTTTATGTGATATGTCGATCTCCAGTGTTTTTTATATTATTGGAGGTCGACATATTTTATCAGGAAAAATGGTTGTTTTTAAATTTTGAACTTATTGATATTTATAAGTTTATGTTTTTGGGACGATAAG # Right flank : AATTTTGAGCGTTTCGGTTCATCCGAGTACACTATGTATTAATTGAACTAACAAGTCTCAACTAATATAATATAGAATGAATTAAAATATGGGGTTTACAGCCTTAATTGTATCCCTCCCCAATTTTTTGTATCTTTGCCCCTCAAAGTAAAGTACAAAAGGCAATATGATCAGTTATTTACAGATAGACGGACTGACCAAGAGCTTCGGCGATTTGGTTCTTTTTGAGGATATTACATTTGGGATTGCACAAGGCCAGAAGGTGGGGCTTATCGCAAAGAACGGTACAGGTAAAACAACTTTACTGAATATCATTGCCGGGAAGGAGGATTATGATAGCGGGGCGGTTGTGTTCCGTAACGACCTGCGTGTCGGTTATCTGGAGCAGACACCGGTTTATCCCGAAGGACTGACTGTTCTTCAGGCCTGTTTCTATTCCCCGAATGAGACGGTTCGACTGATCGCTGAGTATGAAGAAGCGATGGCCAGTGACGATCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTTAGTAGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 193094-192737 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ033920.1 Parabacteroides gordonii MS-1 = DSM 23371 strain MS-1 aczIC-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 193093 27 100.0 37 ........................... TAATAATTCCGGATCGGCAAGTGCTATCGCCTGAGGG 193029 27 100.0 39 ........................... CACAGGTTATCTTCGACACTCTGCATGTATTTTTGTGGT 192963 27 100.0 38 ........................... ATGGTTACTATCATGCAACGTCTGCATGATGATGAGGG 192898 27 100.0 41 ........................... TCGATTGTAGCGACAAACGTTTCAGCCAATTTATTTGTGGT 192830 27 92.6 40 .............T.......A..... CAGATCGGACAGTAATTAGGTTGCAGAAGTTTCCAAAGGT 192763 27 81.5 0 .....................AA.TCT | ========== ====== ====== ====== =========================== ========================================= ================== 6 27 95.7 39 TTAATTGTACCTTAGTGGTATTTAAAG # Left flank : GTTCCAGGGATGAGGACAAGGCTTAATTGTACCAAGTGAAGATATATAGTTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAA # Right flank : TTTTCAAACTTTTTCTAACAGCGAAACTATCTGTTAATCAAAGACAATTCTCTCTTCAAAGGGAGGAGCCATCCTTTATATCAACAAAAAAAGCAATAAATTCATAGGCCAGACCAAATATATGACTATATTTGGGAGAAACTTAGTATACTATTAACTTACTTAGATTATATCTATACCTTATATAATATATAACCTAAATATAATACCAGAATTACTATATGAGAATACATTTATCAACGAGCGCCAACAACGAACTCGTACCTTTCAATTACCAGCAGAAACTTCTTGGTGTATTGCATCGCTGGCTCGGAACAAACGAACTACATGATAAAATATCCTTATACTCCTTCTCATGGTTAAAGGGAGGAAAAAGATACAAAAATGGACTTCATTTTCCTTATGGAGCCAATTGGTTTATCTCTTTTTGTGAGGAGAATTATGTCAAGACCATAATAAATGCAATCATGGACTCACCAGATATGTTTTGCGGAATGAAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 194101-193545 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ033920.1 Parabacteroides gordonii MS-1 = DSM 23371 strain MS-1 aczIC-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 194100 30 100.0 35 .............................. GGTGTAACTGTTCCTTTGTTTTTAACAGCATAATA 194035 30 100.0 36 .............................. CACATACCAGCTGCGCCCCCCAAAGGGCCAACTTGT 193969 30 100.0 36 .............................. ATTCCGAGCAAGGCAGCTCTGATATGTCGCCTGTAA 193903 30 100.0 36 .............................. GGACTTTATCCTTTCCTTTATATACGCTGTTTTCTG 193837 30 100.0 36 .............................. GGGAAGATTGTACAGCCAGCAACTTGGAAATAGGTA 193771 30 100.0 35 .............................. TAAATAGCGGCAGACCCAGGGGCACGGCCAATCGC 193706 30 100.0 36 .............................. TCGATCCTACAAAGCCGATAACTTCCCCCTTTCTCA 193640 29 86.7 37 ..A.....................G-...C ATACTTAAAAACCGGAAGGTTCCAGGGATGAGGACAA 193574 29 76.7 0 ..C...........A-....AA..A..T.. | G [193553] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.9 36 GGTTTAATTGTACCTTAGTGGTATTTAAAG # Left flank : CCGGTAGGCTTGGGATATCCCAAACCTTCCATCCTTCTCCATCTTGTCAATAACCCCCAGCGCATAAATCACAAACCCATTACGCGCCACCCCTTTCCTGATACGATTAATTTCTTCCATACTCATTTCTTGTTTAAATTGATATTGGCATGGAATATAACAGAAAAAACGGGGGGATAGGTTCGGAAGATACCACTAAGGAACAATTTACTATGCAAATATAAAAAGCACCGGGACAAATTGGAGAATAAAACTTACAGGATATATTAATATAATGTATATTTGGAAGCTTTATTCTGTTTTAGTCGACTATAATGCAGAATAGCTGTCATCAACACAGTAGAAACATGTGATTTGGAGAGTATAAGAGGTAGATGATAGTTGTCGATCCCCAAGGTATTTCATACAATTGAAGGTCGACAACTATCATTGACAGAAAAGAAGGAACAAACAAGGCTAGGAGGTATTTAGAACAGGGGAAATCTATGGTTTCTATAAGG # Right flank : TTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAATTAATTGTACCTTAGTGGTATTTAAAGTAATAATTCCGGATCGGCAAGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //