Array 1 27-1832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXG01000037.1 Campylobacter fetus subsp. testudinum strain D6683 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 .............................. AAGTAACTACGCTCTTGATAGCTTTAAGGCTCTAGG 93 30 100.0 37 .............................. TTCGGCTAGGTCTACCGTTGGCATTACTTTAAAATTT 160 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 225 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 290 30 100.0 35 .............................. ATGTCAGAGCATTTATAAAAGCCTAAATTAGGCTT 355 30 100.0 36 .............................. TCCAAAAAAATGCTAAAGCTTTCACTACTTGGAAAA 421 30 100.0 36 .............................. TTTCAATCCACTTTAAAACTCTATTTTTAAAAAACT 487 30 100.0 36 .............................. TTTGCAGACTGCTGTCGTCCAGCTCTGAAATTTTTC 553 30 100.0 36 .............................. TTGTTAAGTCCCAAAAATCCGGACTTTTAGTAATAC 619 30 100.0 36 .............................. TCAAAATTCGCCGTATCTTTGGAGTTTGGCGGTTCT 685 30 100.0 37 .............................. AAATTTAGCAGGTTTTATAGGACATTGCGTTGTGGAA 752 30 100.0 36 .............................. TTGATGAAAATGGCGAGAGACTTTTAACAAAGGCGG 818 30 100.0 36 .............................. TTGATGAAAATGGAGAGAGACTTTTAACAAAGGCGG 884 30 100.0 35 .............................. TCTTGGCTTCCATTCCAAAAGACCACATTAGCCAT 949 30 100.0 35 .............................. AGGCTTAATACAACTTTTAGCAATATTATTATAAA 1014 30 100.0 35 .............................. TTTTTAAATCAATATTCTTATTTTTAATTTCGCTT 1079 30 100.0 36 .............................. GCGGCATCTTTAATGGCTTTTTTATATGTGTCTAAA 1145 30 100.0 36 .............................. GCAAATTCTCTAGAAATAGAAAATCTTTTTCTACTC 1211 30 100.0 36 .............................. CTTTGAGCATTAGTAATACTCTTAGAAGTAGTAAGA 1277 30 96.7 35 ...............G.............. GCTGTTTTCATCTTGTCTCCTTTTTTTCTTAAAAT 1342 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1407 30 96.7 36 ...............G.............. TCATAGAATGTGTTTTTATTGTACTTTCTAGCAGGT 1473 30 96.7 35 ...............G.............. TAGCAAACGCACTTTTAAAGGCTGGAGACGCTATA 1538 30 100.0 36 .............................. TAGTTAGATTTGCGTTCTATTTTATAGATAGTAACG 1604 30 96.7 37 .........................T.... TTTTATATCTAAAATCATCGCTTAAATGACGTTTATC 1671 30 96.7 36 ...............G.............. AGAGAAGTTTCGAAATCGACTTCTGTTTTAGCGTCG 1737 30 100.0 36 .............................. CCTTGATTTTTGTATAGAGTTGGTTTTATGTCAATC 1803 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTAATTAGATGATGAGTTTATTATGG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAATGCTAAAAACATAAATGAGAAAAAGGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1577-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXG01000030.1 Campylobacter fetus subsp. testudinum strain D6683 contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1576 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 1511 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 1446 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 1379 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 1313 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 1249 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 1184 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 1118 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 1053 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 987 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 921 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 855 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 789 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 722 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 656 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 590 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 524 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 460 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 395 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 329 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 263 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 197 30 100.0 36 .............................. ATCAACAAATTTAATAAATCGAGTTGTAAATATTTT 131 30 100.0 36 .............................. AAAATTATTATTTGATGTTATAAATGTACCTGTAGT 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CCAAAAAAGAGAGCGACAAGATGTTTTACGAGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 1590-509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXG01000039.1 Campylobacter fetus subsp. testudinum strain D6683 contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1589 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 1523 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 1457 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 1392 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 1327 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 1261 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 1195 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1129 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1063 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 997 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 931 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 866 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 800 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 733 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 667 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 601 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 538 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGT # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //