Array 1 49784-49118 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNB01000017.1 Bacillus thuringiensis strain DE0604 NODE_17_length_87347_cov_36.881742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================= ================== 49783 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 49717 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 49652 32 90.6 6 ...A......G........A............ TCTGAG Deletion [49615] 49614 32 87.5 35 .GGA...............T............ TCAATACATAAATCCAAAAAACTAACAATCGGGTC 49547 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 49480 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 49415 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 49350 32 81.2 103 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAAATCAAACCCTTTATAGGAGGGGTATGGATTGGGATTTTTGTCATCACATCGTATTTACTGTACATGCTG 49215 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 49150 32 71.9 0 ...TT....C.......CA....AG...G.C. | A [49123] ========== ====== ====== ====== ================================ ======================================================================================================= ================== 10 32 88.4 38 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAACACAACAAGGAACAGGTCCTTATTGATATAAAGGCCTTGATTATTCTCCATAAGTATTACTCATTTGGCGAAAAGTTTCGAAAACATGTCAAAATTATGGTCAACGAGTACAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTATATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGCTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGATCAGTAACACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.42, 5:-1.5, 6:0.25, 7:-0.95, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 53805-53381 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNB01000017.1 Bacillus thuringiensis strain DE0604 NODE_17_length_87347_cov_36.881742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 53804 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 53738 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 53672 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [53654] 53605 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 53539 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 53477 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 53412 32 71.9 0 ....T....C.......C.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 7 32 91.5 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 8.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 60782-60089 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNB01000017.1 Bacillus thuringiensis strain DE0604 NODE_17_length_87347_cov_36.881742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 60781 32 100.0 35 ................................ GTAAAGGATTGTAAGAGGACAGTTACGGACATAAA 60714 32 100.0 33 ................................ ACTTACTTTAGCGCAACTAGAGCATATTCATTT 60649 31 93.8 34 .........C.......-.............. CCGCACCCTGCGAAACAATAACAGTTGTTGTCTG 60584 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACTCATTGAGGTA 60518 32 93.8 33 .........C.....................C CATTGGTTTATCAGGAGTCATTGGCTTATCTTT 60453 31 90.6 36 T.......-..........T............ ATCATTTGAGTGCGATCTATTTCAACAGCATTTAAA 60386 32 96.9 34 .......T........................ ATTTGGTAGCGCATTGTATATGGATGCACGATTT 60320 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 60252 32 96.9 35 .........C...................... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 60185 32 90.6 33 T..........AG................... GGATCAGTAAACGGCAATGAAAAACCCGCCGTC 60120 32 93.8 0 .....................CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 94.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACCGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //