Array 1 14536-14038 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000041.1 Alkalihalobacillus clausii strain 7520-2 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================== ================== 14535 32 100.0 34 ................................ ATATAAGCTCTTATATCACCCATCAACCTATATA 14469 32 100.0 35 ................................ AACAGCAAGAAGGGAGCAGATATTAAAGCCCTGTT 14402 32 100.0 34 ................................ AATGAGAATTTTTATGATTATGAAGATGGAGATT 14336 32 100.0 34 ................................ AACAAATTTAATAGCTCAATATTTAAAAAACGAG 14270 32 100.0 34 ................................ CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 14204 31 78.1 104 ..........A..C......T.C-......TC TCTTTGACAGATGTTACCGATTCCGCGTCTAAAGGTCACGCGTTGTGTAAGTAGTAGAGTCAAATAACAGTTTCTCTGGCCCCCACTCTTTTTCACGCAAAAAC 14069 31 78.1 0 ............T........AC...-..TCA | A [14055] ========== ====== ====== ====== ================================ ======================================================================================================== ================== 7 32 93.7 46 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAACGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCGAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTCCTTGTAAAAGGTCTTTCCGATAAATGGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGTCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 7.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-1.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139577-139348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 139576 32 100.0 33 ................................ CCGCAGTAGCCACATTCTTTCTATGGTTTTTCT 139511 32 100.0 34 ................................ CCTGACTTTTTAATCATGCCATATCCGGTAAAAA 139445 32 100.0 35 ................................ TCAACGTAGTCATGGAACTCTGCAAACGTCGTAGC 139378 31 78.1 0 .........C.T.......T...A...-..CC | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATTGTAGCGACATTAAAACAAGTGAAAGGGAAGAGATCCACTGGTGTAGATGCTAGTCAGTCTTTTATAAAAAAGCAGTGAGTGCTTTTTTATAATGAAGAAACAACCATTCTTACTGTTAGTATTAATGGAAAGAAACATAAAATGAATGAAGGACAATAGATCGAAAGGGGCGATATAAGAATAGAAGGGAACAACATCCACAGTTTGATCTTCTTAATCTTCCAAGAAAAAGAGGAGCAAAGAAGCAGCATTTTTAGTGCGAACCCCAAGCGCACATAAAATTACTAGACCACCCGCACCAAAAAAGAGCCTAACTATGGAAAAATATGTGCGAAAATGGTTAAATGTTGTATATGTCCCATGGTATGATAGAAAAAAGAGCAACTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : AGCGCAATCAAAGGCGGCAACAAACTAGCGGTTTTTCGCATTGCCGCCTACGACAAGGAAAAGAAGAAACGAGTTTCTTCACAGCAAAAAAAGTTTATTTATCAAAAATAAAGACAAACTCGAAGAATTATATGCCAGTCTTCAAAAAGGACAGCTAATCTCTGTCGAGCACAAAGAAAACAACGGATATACAAACATTTATGGTCTGATGGATCGCTCTTACGCAGACAGACGCAAGTCAGCGCAGAGAGGACAGGAAGCGGAAGCAAAAAGAGTGACTGGTCGTGCCAGTCACTCTTTTTTTGACCTATACTTCGAATAAATATTATAGACAAGCGCTCACAAATTCGCTATTTATCACAGTTTAATCCTTTGTGAACCGATCTTGTTCTTCAAACTCAAAAATGATTGATTTTACATTGTGTAGATTCTCTTCTGCAAATGTATCTTGATCATTCTTATCCTCTATATACACCATTGCATTGGTCTCTATTTGATAG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 144383-143419 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 144382 32 100.0 35 ................................ GCATGTTGGGTGAACAATCACGCCCGGTCGTCGAG 144315 32 100.0 35 ................................ ATTAAATATCAACTCCTACTACGATTTTAAACCTT 144248 32 100.0 33 ................................ ATTAGGACTCAATGTTACATTTTCCGTTTCAAT 144183 32 100.0 35 ................................ AGAATTATTTTTTGCTTAAAGTAGGTGAACTTATG 144116 32 100.0 34 ................................ ACTAACAGTCAGTACGAAATTTAGAATAATCATA 144050 32 100.0 36 ................................ TGCATATTGAGGATCAGACCAGTTGCTATTGCTATC 143982 32 100.0 34 ................................ ATCAAAGGTTGTCAATGCTGTCCAGCAGATGTTA 143916 32 100.0 35 ................................ TATGACTTTATCTGCCTTTTCCCACTTGGCATATA 143849 32 100.0 34 ................................ TTGATAGGCTATTTCATCACCTAATTTGTTGAGT 143783 32 100.0 35 ................................ AGTGAGATGGGAACGATGATTAAGGATGAACTAAA 143716 32 100.0 36 ................................ AATTAAAACCGACTTTAATTGAGAAGGAGGCAAAAA 143648 32 100.0 33 ................................ GAGGAAATCAATAACGCTCCACAAACGTTTTCT 143583 32 100.0 35 ................................ TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 143516 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 143450 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 98.3 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GCGAAAGAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACAGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTCCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTCCTTACGCCAACAGGAGTTTTTTAATGAAATATAGTAAAGTAGAAAGCAGAGCAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTAGTATTTTAAGCCGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCACCACCACTGCTTCTAAAGGGATTGCACAGTTGTAGAGGTACTGGAAAAATAAGGTCTTCGTGGTGATGGTAGAACAACAGCTCATAGCTTTGACAGTTAGTAAAACATGTCTACCTTCACAGCGATTATGAAGGTGACTTTCAAATATTCACCATTGGTTCGTCTGGGACGGCGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCATCCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 152026-151598 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 152025 32 100.0 34 ................................ ACGGAGCATGGTCGGCAGTAGACCGGGCATTATT 151959 32 100.0 34 ................................ AACTTGATCCTCGCCGAGCCAGTGGTCAACGCCA 151893 32 100.0 35 ................................ GTCGGAAAGGCTACGAAACTTTATGCAGGATTTTA 151826 32 100.0 34 ................................ CGAGATTAATTGCGTAAAATGGGTCTGCTTTATA 151760 32 100.0 34 ................................ GTCGATATGCTGGACGCGCCACAGCCGCGGCTCC 151694 32 100.0 33 ................................ ATAGATGGTTTCTTTATCTCCAACGACTTCGAT 151629 32 96.9 0 ......T......................... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.6 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : AAGAAGAAGAGGAAGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAGTATGATGAATCTCCTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGGTAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGCACTCAAATATGGTTGAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATAGAGGAAAAGAGCGATTTTTCTCTATGATTCATCCATTAGTTTCCAAAAAATAGGGGAATTTCGCG # Right flank : ATGCCTTGAGACTTTGCCCCCTGGGTTAGAGAGCCCCTATGCGCTGTTTCCACATCCATCTTGAGGTGAAATTGTCCTTTTTTCTGGAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGCCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGCACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTGATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCCAATACAAGTTTTGTTGCTGAAAGGGATGGAACACTTATCGGCTTCCTAATCGGATTCTTTTCTCAATCCCATCAAAAAGTAGCCTATATACATTTCGTTGGGGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATCGATTTTTTCATGTGGTTCAGCAAAACGGGCGAAATATTGTTCGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 158453-157877 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 158452 32 93.8 37 ..........AT.................... CGCAACTCAGCTAGTTCGGCTGCTGTGGTTTTGATGT 158383 32 100.0 36 ................................ AAAATTGAACATGTTATGCCTCCTTTGCTTTTTTTA 158315 32 100.0 35 ................................ AAACGCACTATCACTTACTTTACAGAAATTAAAAT 158248 32 100.0 38 ................................ ATACAATCATACGGGATGGTGACATGTGCCGCGATAGT 158178 32 96.9 37 ...........C.................... GATTGAGCGGTTAGCAAAATACGAGCGCGGTCGAAGA 158109 32 93.8 34 ...........T...G................ TTTGAGGGTCAGAATTTCTGCTTCATACAAACTG 158043 32 100.0 38 ................................ TCTTTGGTGAATTAATAAGGCTACGTGGGAGTGTCTCA 157973 32 100.0 33 ................................ GCGACTGTGCTCTCAAAGCTCATAAACATAAAA A [157961] 157907 31 71.9 0 ...........CA..-.C...CCA...T...A | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 95.2 36 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AAAAGTGCCTCCCACGAGAAATTGATGTGACGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTGAGCTGATGAGGGGAGGGGTATTTTCGAATAAAAGGATTTAGCATTGGTGTTTGAAGAGGGACTACCTTTAAAAATGAGACGAACAAGAACTCCAAACATTGGGTTTTGGAGTTTCTTTTTTTGCTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATTACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTCTTTGTTGCCTATTTTAACGCTGGCCAAAATGCTTTATTCGCCTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGTTAAAGGCAATGGCTTTTGCTAAATCAACGATGTAGGAAGCGTGCTCGTCAATGACTAGCTTT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 170444-170015 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 170443 32 100.0 34 ................................ TTAATAGGATTTTATTCGTGTTTTAATTAATAAA 170377 32 100.0 34 ................................ ATTATAATTGCCTCCTTATAATCCAAGCGTTTTT 170311 32 100.0 34 ................................ ATAGATTGTGAAGAATGATTTGAAACAAACGAAG 170245 32 96.9 34 ...........................A.... TGCCTGTGGTTTCATTAGCGTCAAAAACCACACC 170179 32 100.0 34 ................................ GCTATTAAACAAGCGCAACTCTGATAGCTTCCGC 170113 32 93.8 35 ...........A..A................. ATCGAGCGGAAAAGAAGTTCAAGCTTTTACGGAAT 170046 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.2 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CAATCATCGCGATTCAAATACTAACGATCATTGCCGCCAAAAAAATGATGGACGAAGACAAAGCGTGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGTTTTCATTTTTGGGAAAGTACGTATTTATGAGTGGCAGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGTAAAGAAAGGCATCGATTTTTAATCTATGAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATATGGTAAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGAAGAAGAGCGGCTTTTCCTATTATTTGTGGTTTAGATTCCAGCAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCCTTGCAGGGAACCGTGCTATTGTTTGACTGAAGGTGTACCAGCACCTTCAGTCTTTTTACTTTACT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 175780-174775 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 175779 29 100.0 39 ............................. CCTGCATTTCCTGCCCACGGCGCGCCAACAGAAGCGCCA 175711 29 100.0 36 ............................. TTTAGGTCTTTTCCTGCTTTTGATCCGCTAGCTCCT 175646 29 100.0 37 ............................. AGAAACAGATCAGGCGTTTAAGGAGCGACTAGCGCTA 175580 29 100.0 36 ............................. GCAATACTAACTTCCTTTCCTTTAAAACAATCTCCC 175515 29 100.0 36 ............................. ATGCGACACATGAGGCATTTGAAAAATTCATGGAAA 175450 29 100.0 36 ............................. TTACGAACCCTTTTTCCTGATATTCAGTATGTTAAT 175385 29 100.0 37 ............................. GTAGAGCAGCGTACGCCTAGACAGTCGATGGGACTCG 175319 29 100.0 36 ............................. TTAAATAACGCGAAGATTTCGTCGCGCATCGCATGA 175254 29 100.0 36 ............................. GAATTAAGAACTTCAAAAAGTAATTTAAAAGTAATT 175189 29 100.0 37 ............................. CAGATTGTTACGCCAGGCAATCCGAATAGCGGGCAAA 175123 29 100.0 36 ............................. GAGCGAAACCAAAATGCTAAAAAACATGGACTCTTC 175058 29 100.0 36 ............................. TTCCACGTGTTTCATCAATCGCATGGAACAATTTCT 174993 29 100.0 36 ............................. GTCATTATTGGCTTGGCTGCTGCTTATGTATCCTAC 174928 29 96.6 36 ............................T AAATGACATTCATCGTGTTCTGGAATTCGGGAGCGA 174863 29 96.6 31 ................A............ AAGAAACCAAGCTAATCTGAAGTCACTAAGC 174803 29 75.9 0 .G...........CA..A...G....GG. | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 98.1 36 GTTTTATATGAACTTAGTGGGTTATAAAG # Left flank : TACAAGCCATTGAAAGCGTGGTGGTAACATGTTTGTCATTATCACGTACGATGTTGGCCAAAAGCGAGTTGGAAAAGTATGCACAACGCTGCGAAAATATCTGGACTGGACCCAAAACTCCGTATTTGAAGGGGAAATAACAAAAGGAACATTAAGTAAATGTATGGCTGAACTTGATACCATCATCAAAAAAGAATCAGACTCTATCTATTTATATCAGGTTGCCAATCCAAGAAATTTAAAAAAGATTATCCATGGCCATGAGAGAAACCCTTCCGACTTGTTTTTGTAAATGATAAAATGAGAAGAAGCATTCACAGTTTGCCGTGAATCGGTTTTGACGAAAAATGGCCGAATCCCTTGCCCATTAAGGGATTCAATCTATTTTAAAATAATTCTAAACACACGGCTGGCGATCCGCTGCAAAATGAAGATATTTGATAAACCAACAATCATGAAAAGCCCGCCGTTTTAAGGTTTTTTGTTGGCTGAAATGAAGG # Right flank : GATTAAAATAAAATTAGTAGTATCGAAAGGAGCATACCTGTTAGAAGGGGTTGAAACAAAAAGAGCCCCTAGGGAGGATGTGGAGTGTCTGGAGTGTCAACGAGCAAGAATTGGAGTAAATTCGTGCCCTTACAATCATGACGAGCGGGTTAAACCCTTTTACACGTTCAGGCGACGATGGTCCGCCATCACAAGACTAATAATAAAACTGACTGGCCTCTAGCTGAACTTGGCTTATTTCCTCGAAGACCGTGGCATTCTGTTGGTGATGGGGAACCCGATGCATGTTTCGAAGTCCAAAGGAGCTCGACGATAAGCTTCAAGGTAAAGCACGATGTCAAAGATGCGCGAACGATTGGTCTTCTCGTTAAAGACAGGCGCTTTAGTTACCTGCGTATCCTTCAGAGCCATGAAGCGGATTTGTGGACGGAATCAAACCTTCGAGTGTCATTAACGGAAGACTTGGAAACGAGCACAACAAAAAAATGAACCCCGTCCAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 184692-186820 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBN01000007.1 Alkalihalobacillus clausii strain 7520-2 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 184692 29 100.0 36 ............................. CCGATTTTGCCAAGTGCTCCACCAAAACGACCAACA 184757 29 100.0 38 ............................. AGTGCTTAACCAAGAAAACATGGTTGAACTTGACGGTA 184824 29 100.0 38 ............................. GTAATGTCACCCTTTTTGATTGCTGACCAACTATCATC 184891 29 100.0 37 ............................. CTCAAAGCGTACCCTCCTTTCTTAAATAGGTTTTTAA 184957 29 100.0 35 ............................. TGTTTCTACATTCGATACATCAGTCTTTAGGCCGT 185021 29 100.0 36 ............................. CGCTATTAGTATATCAGGAATTAGCAACCTTTTTGT 185086 29 100.0 37 ............................. GATGTTTATTTTGCCAACAGTGGATTGGAACAGCTCT 185152 29 100.0 36 ............................. ATTCAACTGTCCTGCAAGGAATCGGGTATATCTCAA 185217 29 100.0 35 ............................. GGAAAAATCAGCAACCACAACGTGCACTAGATACA 185281 29 100.0 35 ............................. GTTTCTCGTTCTTCATAATAGACCTCCTGATCTGT 185345 29 100.0 37 ............................. CCGCCTTGGTTGCCTGTGTTGTCTTGGCTTTTGCTGC 185411 29 100.0 38 ............................. TTATAACACACGGCGACCACAGGAGGAAGACGATGGAC 185478 29 100.0 38 ............................. ATGAATTGGAGGTGGTCTGATGCAAGTAACTGTCAATC 185545 29 100.0 36 ............................. CGAAAATGTCATTGCTGTCGCAATTGGGCAGCCCTG 185610 29 100.0 35 ............................. GATTACGACAAGAAGATAGTTGTTGATGCAGGTGG 185674 29 100.0 35 ............................. GAAGATATTTCGCGCGAGATTTTAAAATCTATTCA 185738 29 100.0 37 ............................. GCCATGGCGTTAAGACCGACCTGCCTCAATCGTGAAG 185804 29 100.0 37 ............................. GTTCTCGCCTTAGCTGGTCTGTCGTCTCAATCTTCCC 185870 29 100.0 35 ............................. CGACCAATATCATCACGCATAAGACGTGATGGCGA 185934 29 100.0 36 ............................. ATCATTGATAGCTCGCGGATTGCCCCCTGACTCTTT 185999 29 100.0 37 ............................. GCTTTTACTCCTGTCACTGTACGCACCTCGCCTGAAG 186065 29 100.0 36 ............................. TTTATTTAATTTTGTAAACTTGATTAGTTGTTCTTG 186130 29 100.0 37 ............................. TTTCTTCCGTGTGGGAAACTCGCGCATTGTAATGATC 186196 29 100.0 38 ............................. ACGAAAGTAAATGTATTCTCGCGCCATCCTGCGCCTTT 186263 29 100.0 37 ............................. AGCTCTATTATCTTTTCGAAAGGAATCGTGTCAGCTT 186329 29 100.0 38 ............................. AGGTCTTCAGCAAGACGGGACTTGTCCAACTTCTTCAC 186396 29 100.0 36 ............................. TTATTTAAAGGCAAAGAACCCCGTAAAGATAGCTCC 186461 29 96.6 37 .........................G... ATGCAGTAAACTTGATATTTACTGATTTGGCTTCTAT 186527 29 100.0 36 ............................. TAGATATTCAACGGGAATTCACTAAAGCATCTATAA 186592 29 96.6 39 ..............T.............. CTGGTCAATTGACCGCCGATGCGTAGATGAAGCGGGACA 186660 29 96.6 35 ..............T.............. CTGCTATCAGCATACAACCTTTTTTTCCGAGCGCA 186724 29 86.2 39 .......C.....GT.............T TATAAAAAAGCACAGTCGCAGTTGCGACCATGCCGTTTA 186792 29 79.3 0 .......C......T........T..TTC | ========== ====== ====== ====== ============================= ======================================= ================== 33 29 98.6 37 GTTTTATATGAACTAAGTGGGTTATAAAG # Left flank : AACGATAGGCAATCGGTAATTTTTCTACTTTGTACGTTACAGCAATCCGCATAAGTCACCTCCAACAAGGAATTTATACCCATTATAAATATACCAAATTTTTGGTTACTCTAACAATAACCACTTGATTTCAAAACTGATAATTCTATCATAGTTTGATCGCTGACAGCTTGTGTCAGTAGTAAAAAAATTTTTTAAAAGAAATACTAGCCACGCACCCCTACATATTTATCGTAATAGAAAAGGCCTACAAACATATAGAAAAAATCTTTTTCGCTAATTTAAATTAATGGTAGAATAGGAAAAGAACATTTCACTGACTGCCGTGAATCGATTTTGATAAAGAATGGCTGAATCCCTTGCCCATTAAGGGATTCAAGCTATTTTAAAATGATTCTAAACACAAGACTGGCGATCCACTGCAAAATGAAGACATTTGATAGGACAAGCAATCGCGAAAAAGCCCGCCATTTTAAGGTTTTTTGTTGGCTGAAATAAAG # Right flank : CTGTTATTACATACATGCTATTTTTCATCCATTTTATCCCCTCCACTTCAAGCATCCCACCTTCTTTGACATAGTTCTCCAGAACAAGATACACTAGAAACTAGAATCATAGGGAGGCGGTATTATGGGAAATGCGACACGTGATTTGCGAAAAGTCGAACGGATTTTTACGATTTTAAACTTGCTGAGAGAGCGAGATACCGTTACGGCAAGTGAGCTGGCTGAATATTGTGGCACAACGCAACGGACCATCTATCGCGATATGAAGTTGCTTGAAAAAGTAGGCGTACATTATGTAACAGAAGGAAAAAGCGGTTATCGGCTTATTTCTGGTCCTGTTATACCCCACCGCAAGCTGACGCAACAGGAATGGATGGCGCTCACTGTTTACCCACTGGTAACAAATGATTTTCTCCATAATGGCCATCCGGTACATGATGCCTATCGGTCTGGTTTCGAAAAATTGAAGGGGCTTACACGTGATTCCACTACCACGCAGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTAAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //