Array 1 8780-6827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHZT010000024.1 Actinobacillus pleuropneumoniae strain 18-1342 contig00024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8779 28 100.0 33 ............................ AATTAATGTGCTAAATCATAGCGAGAACAAAAA 8718 28 100.0 32 ............................ AAATCACTAAGAAAGCGATTAAATGACTTTTC 8658 28 100.0 32 ............................ TATATAGTCAATTCTTTTATCAACCAACCACC 8598 28 100.0 32 ............................ ACTGAACCAGTAAAAGCAACAAATTTTAATGA 8538 28 100.0 32 ............................ TGTGGGCGGTAGGCTCAAAGTGTGGGTAAGCC 8478 28 100.0 32 ............................ CGAAAATGACCTTATCACTCGATGATATTAAA 8418 28 100.0 32 ............................ GCTTTAGAGATACGAGAAAAGTATTTTACATT 8358 28 100.0 32 ............................ CCAATCGCTAAATCAGATTTAGCCGAATATCA 8298 28 100.0 32 ............................ CCTTGTTCGCTATTCTTATTATGGCCCTTATA 8238 28 100.0 32 ............................ TTTGGGGTATTTCCGTTCCAATGCATTATTTA 8178 28 100.0 33 ............................ CATTAGCAACATCTAAACCATACTGTGTGATTT 8117 28 100.0 32 ............................ TCCAAGTGAGCCAGCTACAACTAAGCCAAAAT 8057 28 100.0 32 ............................ AAGTAGTTCTTGGCGTGCTTTAACGATTAAAT 7997 28 100.0 32 ............................ TGAAAAAACCTACCAACAAGCAACAGTTACAG 7937 28 96.4 32 ....................A....... TCAAACGTAAGTATCCGAACTTGACGATTGAG 7877 28 100.0 32 ............................ TACAATTTTACGCACACGCTTAACAATACTTT 7817 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 7757 28 100.0 32 ............................ GCATTACCTAGACACGGCAAAAAATGCGTTCC 7697 28 100.0 32 ............................ TAGCGGGTGCAATCCACATTGCAGAAATCAAG 7637 28 100.0 33 ............................ TATTTAAAATAGTCTGATGTTGAATCTTCCGAT 7576 28 100.0 32 ............................ TGCTATGGTATTAGGTCTACCTATGCTACCCG 7516 28 100.0 33 ............................ AGAGGGCGCAACCAATAACGAAAAACAAACATT 7455 28 100.0 32 ............................ GTGTAAAATCCCATGACGTAAGCGAACCGCTT 7395 28 100.0 32 ............................ AACTGTCGCAGCTCCCATTATCGGTGCGTGAT 7335 28 100.0 32 ............................ ATTTAAAGGGGCAGAAAATACATTTTGTAAGG 7275 28 100.0 32 ............................ ACTAGCCCCTAAGCTATCTGTGCCTAAGCTAT 7215 28 100.0 32 ............................ ATTTAAAGAACTCTTGGATAAAAGTGATAAAA 7155 28 100.0 33 ............................ TTAAAGCAGACAACAATAACCACGTACCTTGTA 7094 28 100.0 32 ............................ AAGATCTTGAACGCTTTGAATGAAGCAAATAT 7034 28 100.0 32 ............................ TACTGATTTTGTAACATCATTTACAGTTTTTG 6974 28 100.0 32 ............................ CATACGGTTAGCGTAAGCGCGGTTTGCAATCT 6914 28 92.9 32 ........T...............T... AAATAATGCGGCAATCAATGTCATTTTTACCT 6854 28 85.7 0 .................T.......TTC | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.2 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTGCCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGCCAAAGTGCTATTCGCCGTACAGAGAAATTTTTAACTCAACAAGGGAAATGGACCGAAGATGTTCGCAAAGAGATGCTAATACATCAACAGAATCAAAAAACATTTCCCCATGTAAAACTCAAGAGCAGTAGTACTAAGCAGCATTTTGTATTAGCAATACGACAATTTCGTTTAGCAGAACCCGCTTCAGGCTTATTTAACGCATATGGATTAAGCCAAGTAGCAACCGTTCCTCATTTCTAACCCATTTTATAACCCTTTTTTCAAGAGAATTCATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : ATAAAATAGGAGGAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAAACGATTTTACATTCTAAACGGGCGAATATTTATTACTTAGAACATTGCCGAATATTATTAAACGGCGGGCGTGTCGAGTATGTCACCGATAAAGGTAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCAGCAATGCGAGAGTTATCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGTGGAGGAACACCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTGATTGGGAATATGCTCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //