Array 1 927369-927787 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICR01000002.1 Clostridium neonatale strain NEC86, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================================================================= ================== 927369 31 90.3 89 .........T.....A........T...... TTTTGTTCTGATAAAAATATCAGATCTAATGGATTATTTATGTTAATCTTAATCCCATTCTATAGCCATTTCTCTTGTAATCGCTACAC C,T,T [927371,927376,927379] 927492 31 100.0 36 ............................... AGGGGTTATATTCTTTGTGCATTCTTGCATGTATAT 927559 31 100.0 35 ............................... AGAAACAATATTGAGTATGGCAAAGAAATTATATG 927625 31 96.8 35 G.............................. ATGGATGTTTTATACCCATCTCAAATTGTTTCCAT 927691 31 100.0 35 ............................... TTGTTCTAAAAGCTTAGAAAATTTAATTACAAACT 927757 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================================================================= ================== 6 31 97.9 46 TATTTAAATACATCTCATGTTAATCTTAATC # Left flank : ACCAATATACTCTAAAGGAAAAATAACTGAAAAGCCTAATTTCATTGCATCTAAGGCAGAAGAAGCAACGCAACAATTTCCATCAATTCCTATTGTCTCTATTTTGCATATATCTTTATTTTTTAACAATTCAAAGAAAATATCATCATCAAACATACTTGCTTTGCCTTTTTCTATAATAAAGTTTGAAGCAATAGATAATCCTTTCACAAAATCAGATATATATATTTCCTTTTTTCGCTTCCCCTTGTTCTTAACATATATAATCATTTGTCCATTATTATTTGCTATGGCAATTCTTTCATTAACCTTATCTATAAGTGTATTAGGATAGTAATTATGTCTGCTTTCTTCTCCAATATAATCCTTCTGCATATCTATAACAATCAACGCAATTTTATTTAGCATGGCCAGTTTTTCCTTTCTGTTAATAGGTTTAAAATTTGATTTTATCAAGAATATTATGCTCTTTATCTCTGCTTATTTATTACCATTTTTCA # Right flank : CCAACGCGATTTAGGCATTCTTAAACTTCAAAAATTCCTCTATACTAGTAATAATACCACATCACAAAAAATTTACCAAGGAATGAAGTTTTTCTGATAAAAATATGTTAAAACTATCAAATATCCTATCATTTCTAGCTTTAACAAAGATAGCTGAAATTTCTACCTGGTAAATTTATATTATTAAATCTTCTCCTGTATTATTGGCTGAACATCCAAGTACTTCTTCACCAAATACATTATCATTCATAAGCTTTATTATACAAACAAAATCTTCATTTTTATCTATTACTTTATTTAATTCTGTTTTGAATCTAATTAATTTTGACGGTGACATTTCTCCTCTAAAGACTGATTTTTGAAAATGTGATAAATATTTTTTGCAGACCTTAAACACTCTTTGAACTCTTTTTTCATTAACATCATAAAACACAAATGCATAGTTATAATTAGTTACTTTTCCCACTACATCCCCTCCTTTAAACTGAAGGGAATAAATT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 955242-955592 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICR01000002.1 Clostridium neonatale strain NEC86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 955242 29 100.0 37 ............................. CTTGGAGAACAGCGTTAAATTTAACGCAAGATGAAGT 955308 29 100.0 35 ............................. CCCATCCAATTTGATGTAGCTCCTGCTAATATTTG 955372 29 100.0 35 ............................. CGTCTCCAGTCTTTATTAGGTATATTAACAAGTGT 955436 29 100.0 35 ............................. TATAGTGAGGATAGTGATAACTCTAGTGGTGGTAT 955500 29 100.0 35 ............................. TGAGCCTATAGAGAAAGATGAACTTAAAGAATTAA 955564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 36 ATTTAAATACATCTCATGTTAATCTTAAT # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAACAGTCCAGTAAACCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGGTGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATTTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAACCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : TTCTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATCGCTTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTCCACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCATTACTATTTAAATAATATCCTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1559870-1559576 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICR01000001.1 Clostridium neonatale strain NEC86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1559869 30 96.7 36 ............T................. AATAAATTTTTATCTTTCTCAGTGTTCTTAAAACTT 1559803 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 1559737 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 1559671 30 96.7 36 ...............T.............. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 1559605 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 92.7 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCACATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGATCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCTGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCCATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACTAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //