Array 1 2349468-2350105 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019687.1 Klebsiella quasipneumoniae strain SNI47 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2349468 28 100.0 33 ............................ CTGCTCGGATTCCGGCTGCACCTCCATGATCCG 2349529 28 100.0 33 ............................ ATGTGACCGGGTGACCGGGTGAATGCATGCCGA 2349590 28 100.0 34 ............................ CTGCGATAACGGGGAGTTGTGACTCTTCTACAAG 2349652 28 100.0 33 ............................ CGGCGGAAAAAGCCGGGCTGGCCAGGTCCTATG 2349713 28 100.0 33 ............................ CATCGTCCGATAGCCGTAATCGTTGGGGTGTAG 2349774 28 100.0 33 ............................ TACCCGTTTGCTAACCAGACCGTTGCCGCTAAC 2349835 28 100.0 33 ............................ TTCTGCCTGAGTCATTACGGGAACCACGGATAG 2349896 28 96.4 33 ..................T......... CATCACAAAGCAGCAGGTGGCCGAAGAAGTCGG 2349957 28 96.4 33 ...........A................ TATCATGATGCGTACCGAGTGGGGGGCTTCGCT 2350018 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 2350079 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 98.7 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GGGTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGTGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGAATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATAAGGGGAGATACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CTCGTGACCGTTTATCTGATGCAGACGCATCAATACGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTTCCTATTAATTATTTTTAATTTTTTATATTATTATTTTGGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGTTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2358815-2359271 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019687.1 Klebsiella quasipneumoniae strain SNI47 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2358815 28 100.0 33 ............................ CGGCAGGACATCCCATATCACCACCGTGCCGTC 2358876 28 100.0 33 ............................ CATCGTACAAGCCATCGCCCGCGACGTCCTGGC 2358937 28 100.0 33 ............................ CGTAAATAATGACTTCATGTGCTGGCTTGTAGC 2358998 28 100.0 33 ............................ TATGGCGAGACCGATCAGGTGTCGTTTTTTAAA 2359059 28 96.4 33 .....................T...... CAGGTGGATGCAGCTGGAGGAATTGCTGGCTTC 2359120 28 100.0 34 ............................ CGAGCAGGGGAGCCACAACGCGAGAGACAGCATG 2359182 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 2359243 28 82.1 0 T......A....TC..........C... | C [2359264] ========== ====== ====== ====== ============================ ================================== ================== 8 28 97.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAATATTCCTCAGCCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CCGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCTGCCTGCCAGAAGGCGTCTACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCTTCTCCTGTGGACGGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //