Array 1 9542-8628 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXN01000065.1 Nitrosomonas cryotolerans strain Nm55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 9541 37 100.0 30 ..................................... ATCGAAAATGTAGTTGATCCTAAAAGTTCT 9474 37 100.0 29 ..................................... AGCTGAGCTGGTTACTGGCAATGAATTAA 9408 37 100.0 29 ..................................... ATAAAATGAACTTACAGGTGCCTTACGAC 9342 37 100.0 31 ..................................... GAAATGAAAAGGAGGGCCAGCATGAAGGTCT 9274 37 100.0 32 ..................................... CACACGGTAGTAATGGACGATCTACTGAGAAC 9205 37 100.0 29 ..................................... ATATAATTAAATACCTGAATGTTCATGCT 9139 37 100.0 30 ..................................... CATAAATCAGGTTATATATGTGTTTATGTT 9072 37 100.0 31 ..................................... ATTTCGTTATTAATTCTTACATCAAAGTAAG 9004 37 100.0 32 ..................................... GGGAAGTTTATGATAAGTTTAACGATATACAC 8935 37 100.0 31 ..................................... CCCTGAAGGTATGAAGCCTGAAGACTACAAA 8867 37 100.0 30 ..................................... GAAAACATTGTCAGAGCTTAGAACAACTAT 8800 37 100.0 30 ..................................... AATAAGCCAGTAGAAGCTATCGACGTAAAG 8733 37 100.0 32 ..................................... GGGAAGTTTATGATAAGTTTAACGATATACAC 8664 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================ ================== 14 37 100.0 31 GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Left flank : AGGATCTCTTTAAACGCGGGCGGAGTGATAACAGTTTTTAATTCAGATTTAAACATACTTAATCATGCATCACCCCTGTTATGGTGTCAAGCAATATCCAATAATGAAAACATCAAAGTTCAATGAGCAGAAGCTGATTGCATGGTTGCATAGACGTTGTTGAATAAATCGAACTTAGCGGCGAGAAGATAATCTGTCAGGCATAATGTTGAGGAATTTCACCTGCAGAGAAGCCAATGCCTTATAAACACAACGAGAACCATCGTCATAAGATCAAAAAATCTCGTAGAAAAATAGCCGGCTCAGGTTACTTGTAAAAACACAGACCATCGCGTACAACTAACCCCGTTTTCGTAATTCTCCCCTACAATTTCACCGTCTAGCCTGTTTGAAAATCTTCGGTTCACCATGTCGTCTGCCTAGTCAGGCATTTTCGTCGATCAACTCTGCACGTCTTATTTCTGCAACACAGTCAGCAAAAAATCGCGTCATCAGTAAGA # Right flank : CCCCATCCATTACTTGGTTTTTATCTCAGAAACAACAGCTTATCCGTTGCTCCCTGAGTTTCTGCAGTAAAGCAGTGTAGCGGATGTTTTTCCATTTTACCAATTTTTCGGTGATAACCTGCTTTTTTTTAAAAACATTATGATGATAGATAATACACGATCTTGGAGAACCATTATAAGACCGATCTTAGCATTGGGCGAGTCAGTCTGCCAGAGTGACAATTTGAGGCGTGCCTATATGCGCTACAAGCGTTATCGCGGCCTGTGGGCGAACAGAATGCCAATGTCATCGGTCGCAAATGATCCGGTCGGCCCAATCCTAACACTTGCCGAGGCATTGCGTAATGGCAGTTATCGCCCTACCCCGCCAAAGTGCATATCAATTGCCAAGGCAAATGGCGAGCGACGAGATATCAAAGTTTATATGATTCGTGATCGTGTTGCCCAACGTGCATTGTTACAGGCATTGCAAGCGCGCACTGATCAATTGATGTCGCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1263-751 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXN01000095.1 Nitrosomonas cryotolerans strain Nm55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 1262 37 81.1 31 CA...TC....CA....................T... TTACGAAAATATATCTAAACTAAAAAGGATA A,A,T [1247,1251,1254] 1191 37 97.3 31 .................................T... GTTTAAACCTTCGGATGTCAACATAGTCATC 1123 37 100.0 30 ..................................... CCCCATTAGAACTAGATTAGATATCTAACG 1056 37 100.0 30 ..................................... AATCATCATTACTTCTTACAATAAAATAAC 989 37 100.0 29 ..................................... CCAAGTCTTCGGAATTGTTAGAAGATAGA 923 37 100.0 29 ..................................... TCATACTTTTACAACAAAGAAATAAAAGC 857 37 100.0 33 ..................................... ACATCAGTATGACGAACTACACATACCCTGGGG 787 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 8 37 97.3 31 GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Left flank : TGTTGGGACAATGCACCAATAGAAAGTTTTTGGGGAATACTTAAAAATGAACTGGTGCATCATCGGAAATTCAAAACACGACAACAGGCAATTCAAGAGATTACCGAATACATCGAAATCTTTTATAACCGACAACGTAAGCAAAAAAGACTGCGCTATCTGTCACCGGCAGCATTTACTCAGCAATAATATTATGAAAAGCTTATAGCTGCTTAACCCGATGGACTCCATATTTGACAACACACATCACATCTGCCTAGTCAG # Right flank : CCCCATCCATTACTTGGTTTTTATCTCAGAAACAACAGCTTATCCGCTGTTCCCTGAGTTTCTGCAGTAAAACTGTATAACGAGTGTTTTTCCATTTTACCAATTTTTCGGTGATAACCTGCTTTTTTTTTCAAAAACATGATGCTGATAGATAATACACGATCTTGGAGAACCATTATAAGACCGATCTTAACATTGGGCGAGTCAGTCTGCCAGAATGACAATTTGAGGCGTACCTATATGCGCTACAAGCGTTAGCGCAAGCTACCCTGGACTTATACCCCAACGACTCACACTATACCAAAGAAATAACAAACTCATCTCCTCCCAAACCGCAAGGCTTCGCCATTAGTAATACGCAGGGACTTGGGACACTTTGGTTTTTCAAGTCTGAATATAGCGACCTACTGCGGTTTTACTGATGCCTAGCTGCTCTGCAATCGCCCGCACACTCAAGCCCTGCGCCCTTAGCGCTTGTGCCTGCTGCTGCTTGGTATTCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 2434-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXN01000054.1 Nitrosomonas cryotolerans strain Nm55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2433 28 100.0 32 ............................ TTCGTTTTGTTGTGTTGATGTATGTCATTATA 2373 28 100.0 32 ............................ TTAGCGCTCTAGCAGATAGTTTTTTTGGTGGC 2313 28 100.0 32 ............................ TTATGATATTTGGGCTCGTGACGGATTTTTAA 2253 28 100.0 32 ............................ AGGAGGGAAACTACGACGGCAGAACAGAACTA 2193 28 100.0 32 ............................ TGATTTAAGTTTAGCTAACCCCTCCCCCACCT 2133 28 100.0 32 ............................ CATTGTATGAAATTTACTCTTATCATGACGGT 2073 28 96.4 32 A........................... TCATTGCCACTGTAATTAATGCGATATTTAAC 2013 28 100.0 32 ............................ AGTTGCCCAGCTCGGTATTTATCATACCTTTG 1953 28 100.0 33 ............................ GATTTGAGCGAACCTCAATAAGAAGACCGCGAA 1892 28 100.0 32 ............................ AGATTTATCTGCATAGGTTTGTACATTAAATG 1832 28 100.0 32 ............................ GATCAGGTGCGTGCATTTGTGAATAATTCGGG 1772 28 100.0 32 ............................ AGGGATTCATTATTGGCTCGCTCTTCGGCTGG 1712 28 100.0 32 ............................ GAATGGCGCTGACGGAACATTATATCTCACAT 1652 28 100.0 32 ............................ AGCATGGGCGCGTCAGTCGCGGCTATTGCAGG 1592 28 100.0 32 ............................ AACACCAGGTAAAGATATCCCAGTACCACCCG 1532 28 100.0 32 ............................ AAAACGTGAAATGTATATAGATTCTAGTGTTG 1472 28 100.0 32 ............................ ATTATTAACGTCAATCAGATATCTATTTTCGT 1412 28 100.0 33 ............................ TTATTTTGTCGATAATGACTACAAATAACTATT 1351 28 100.0 32 ............................ ATTGAGCACTTAATGTGCCGAGCGTGGCTTCA 1291 28 100.0 32 ............................ TGACATGCATACCAAAATGATAAAAGAAGCTA 1231 28 100.0 32 ............................ GGAAGGATGGCTAGACACGGAAATAGAGGAGA 1171 28 100.0 32 ............................ TGAAAGAATTTATATTAGCAATATTAGCATTT 1111 28 100.0 32 ............................ TTTAGAATATGGTAGGTTTCTTGTAGTTTTCC 1051 28 100.0 32 ............................ GTGACCCGCTTATCTTGATAAAGCATCGGCTC 991 28 100.0 32 ............................ TTGAAATTACCTGATTTTTTACTCTTATCCGG 931 28 100.0 32 ............................ GATCAATAACTGAGATAAGCTGCTCTGTTCCC 871 28 100.0 32 ............................ TTTGTGGGAGATGACAGGTTGATAGAAGGGTA 811 28 100.0 32 ............................ AGTACTCATTCGCGTCATACGGCTCCAGCGTT 751 28 100.0 32 ............................ ATCGATCATCTGCTTCATTCTCGTTTTTATCA 691 28 100.0 32 ............................ AGATAAATATATGAGAGGTAGTAGAGAACAAC 631 28 100.0 32 ............................ TTAGTCTCTGCACCTTCTAATGCTTTTATACA 571 28 100.0 32 ............................ ATCTCTATTTCGTCATCAATACGTTTTTCGAT 511 28 100.0 32 ............................ ATGATTCATCGGGCTGGCTGGTTAGTGACGGC 451 28 100.0 32 ............................ TACGGAACTTAAGAAGCACTACCATGTTCTTA 391 28 100.0 32 ............................ GTCGCTAAATATCGCATTAATGACGGCGGCAA 331 28 100.0 32 ............................ TAGAAAAAGCAAATCTTTCCCATAAAAATCTT 271 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.8 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGCTAACCCGGTTTGATGTTGCGAAATGGTTGACTCGATTAAGTGACTACGTGCACTGTACCAGTATCCGCTCCGTACCGTATGAGCTGAAAGGTTACGCGATATATCAACGTGAACAACCTAAAACTAACAAGGAACGCTTAGCCAGGCGCTATGCTATCCGACATCATATTGACTATGTCACAGCTATTCAGCGTTATAGCGATATGGAGTATAAGTTAATACCTACCCCATTTATTCGCTTGAAAAGCTTAAGCAGCGATAAAACATTTTGTTTGTGGATCAAGAAAAAAATAGCAGTAGAGTCTTCAAATAACACTTTTAGCAGTTATGGCCTAAGCGCTTTCGCTACTGTTCCTGAGTTTTAACCCATTTTTTTAGCTCTTTAAGAAATAGCATACAAATTAGCCAGTTGCATATATCGGTTTTGGGAATGGTTAAGTTAACTAAAATTTCCTGTAAACTGCGATGCGACTGGCTTTAAGTTTTTTTATTGCCA # Right flank : ATTGTCTGTAATTCACCCAGATTTCCCATTAAGCGGGAATTTTAATGGAAGCCATTAAAATAAATGGTTTTGACATCCTCCCCTTCCTAAACGAAGGGGATTCCTAGCGACTTATTAAGCCGTTAAGAGTAGGTTTGTATTGCTACTGTCTACTGGTTCCTGCTTCTTAGACGAAACTAACGTTTCAACTCCACAGGCTAACAAGCGATGTCCTCGCTCAAGTACATTCAAGGCACCTACCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //