Array 1 15878-16882 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXZ01000191.1 Salmonella enterica subsp. enterica serovar Soerenga str. 695 SEES0695_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15878 29 100.0 32 ............................. CCGCATTACACGTATTTAATTTATTGCATGAG 15939 29 100.0 32 ............................. TTCGATATTGACATGAGCGCGTTAACTGGCCT 16000 29 100.0 32 ............................. CGATATGCAGTATTCTGCAAGATCTGGCGGCG 16061 29 100.0 32 ............................. TCCTCTAAAGACTGGCTAATCACGGTTAACGC 16122 29 100.0 32 ............................. TGCTGTACAGCACGCTCAATTAGCCTCGTGGT 16183 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 16244 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 16305 29 100.0 32 ............................. GCGAATGGTGCTTGCACCTGAAGTTAAGCCCC 16366 29 100.0 32 ............................. ACGATATATAAACGCTCTCTTCTGCCAGAGTT 16427 29 100.0 32 ............................. GAAACGCAGCGCGGCCTGACCTGGTACAACTA 16488 29 100.0 32 ............................. CGATAATCGCTCCTGTTTCAAATCGACGGGGC 16549 29 100.0 32 ............................. ATTCAGGCGACGAGGTCTGGCGCCGACTGGTC 16610 29 100.0 32 ............................. CAAATTAGAAATAAAAGATTTTCCACTGATCT 16671 29 100.0 32 ............................. CCGTGCCCCTGTGTGGGTTGTGCTACCGCGCC 16732 29 100.0 32 ............................. AGCGTTCAGGAACTTGAAATCGCGTTGCAGGC 16793 29 100.0 32 ............................. GATTTCAGGGTTATCCTGCAACCATTCCCTGA 16854 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ACGGGGAGCCGCGTTTACACATCAAAGAGGCCGTGTTCCCCGCGCCAGCGGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93566-95972 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXZ01000151.1 Salmonella enterica subsp. enterica serovar Soerenga str. 695 SEES0695_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93566 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 93627 29 100.0 32 ............................. CGGGTTTTGCGCGTGATGGGCGCCCATGAGGT 93688 29 100.0 32 ............................. CCTGTCGCAGCGCTTCGAGACGGCGCGCGTCA 93749 29 100.0 32 ............................. ATTAATTCAGTGGCTTAATTCTTCCCGGCGTA 93810 29 100.0 32 ............................. CTGAGTTGTGGCCGCATTTTCTTTGTCTTCCA 93871 29 100.0 32 ............................. AATTCGCCCGGATGTTCACTTACGGGCTGGGC 93932 29 100.0 32 ............................. TTGATCGGGATTCTGGCCGCACTGGGTGCCGC 93993 29 100.0 32 ............................. CGTTGTGCTGGGCTACAAATCCCCGCTGACAC 94054 29 100.0 32 ............................. GTTCTTCCTGCTTCGGCTGTTCGCTCATCAGC 94115 29 100.0 32 ............................. GGGCAGATTGCCAGGCGTGACGCGCTGGCCGA 94176 29 100.0 32 ............................. CGAGGGCGGGTTTCCAGTGGCTACCGTATATC 94237 29 100.0 32 ............................. ATTGGCGGGAAATGACGGGGGGCTACTACGCT 94298 29 100.0 32 ............................. TGCGGATTTACCGTCGGCTAAACCACGCTGAT 94359 29 100.0 32 ............................. GATGATGAAAAAAGTCCTGCAAAACACGTTTC 94420 29 100.0 32 ............................. GTGATATGGAATTTAACCTGCAAGACCAGTTT 94481 29 100.0 32 ............................. GGTACTTTTGATACCAATAAAGACAGAATTAC 94542 29 100.0 32 ............................. CCGGGGGCTTAACTTCAGGTGCAAGCACCATT 94603 29 96.6 32 ............................A CGGGGGGAAAAACCGCCAAAATATACGACAGC 94664 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 94725 29 100.0 32 ............................. GCGTTCGAGCGCAGCTTAACAGTCTGGGAACC 94786 29 100.0 32 ............................. GTGCGAAAACAATAAACGTGGTGGAATGGGTA 94847 29 100.0 32 ............................. TAAACAGACTGAGATTTTTCGGTTTCCGGATC 94908 29 100.0 32 ............................. GCGTTACGCAGCCCGGCAGCACAGTCAGCACA 94969 29 100.0 32 ............................. AGCGGCTACGATGACGACCTGCTGGCAGGCGA 95030 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 95091 29 100.0 32 ............................. GGGTAATTATGACGAGTCAGAGCATATTGCCC 95152 29 100.0 32 ............................. CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA 95213 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 95274 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 95335 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 95396 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTAAGGGTGCGAA 95457 29 100.0 32 ............................. CTTTTCCCAAAGAAGGCGCGCGCGGCGTTTTA 95518 29 100.0 32 ............................. TCTGGCAGATACTGAGTTTCCAGCTTGTTAAT 95579 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 95640 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 95701 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 95762 29 100.0 32 ............................. GGCCTGAACGGCGATCTGATTACGTGGAGTAA 95823 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 95884 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 95945 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTTCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67936-66807 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXZ01000075.1 Salmonella enterica subsp. enterica serovar Soerenga str. 695 SEES0695_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67935 29 100.0 32 ............................. GTGTCGCGGCGCGGCAATTTGTTTCCTGACTG 67874 29 100.0 32 ............................. GCAATTTTGTGGCGAACGTGCTCGCTCTCATC 67813 29 100.0 32 ............................. CAGAACTGGTTTGTTTCGCGTGTAGTCCGCCC 67752 29 100.0 32 ............................. GGGTTATTGAGGTTTCCACGCGGAAAGTGAAC 67691 29 100.0 32 ............................. AAAATTATCGAGGATGATTTTAAAACCGGCGC 67630 29 100.0 32 ............................. GGATTGGGGGGACGTCAATATTAAACCCGATG 67569 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 67508 29 96.6 32 .......T..................... CCGGTACTCACCGCTGAGATTAAAACGCTGGC 67447 29 100.0 32 ............................. GCTTTGCTCTTTTGTAAATGACACATTGAAAT 67386 29 96.6 32 ............T................ ACCGCAGCGTTCGCCCGCAGGGTAAGGGGCCC 67325 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 67264 29 100.0 32 ............................. CCCGCCTGCATCGCGAAATCATTAATCGGGAC 67203 29 100.0 32 ............................. TTCATCATGACTATGGGCGAGGTTGGCGAACT 67142 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 67081 29 100.0 32 ............................. CGAGCGTAGCCGCGTGGTCCTCTCTCAAAACA 67020 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 66959 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 66898 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 66836 29 100.0 0 ............................. | A [66809] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATACACTGGTAAAACGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //