Array 1 949117-951280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZQ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA14 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 949117 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 949178 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 949239 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 949300 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 949361 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 949422 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 949483 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 949544 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 949605 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 949666 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 949727 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 949788 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 949849 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 949910 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 949971 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 950032 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 950093 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 950154 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 950215 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 950276 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 950337 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 950398 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 950459 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 950520 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 950581 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 950642 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 950703 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 950765 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 950826 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 950887 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 950948 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 951009 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 951070 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 951131 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 951192 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 951253 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 967413-968828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZQ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA14 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 967413 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 967474 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 967535 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 967596 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 967657 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 967719 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 967780 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 967841 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 967902 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 967963 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 968024 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 968085 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 968146 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 968207 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 968268 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 968330 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 968433 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 968494 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 968555 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 968616 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 968677 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 968738 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 968799 29 96.6 0 A............................ | A [968825] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //