Array 1 502858-501689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACUWT010000003.1 Escherichia coli strain BA1166 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 502857 28 100.0 32 ............................ GCTCTGTTGGATGAACGCGGCGCATTAACAAC 502797 28 100.0 32 ............................ CAGCGGAGTTTTTGACTGAACGAACCCCTGAG 502737 28 100.0 32 ............................ CTAATACCCCTGACGCCGCTGCCGCCTGGATA 502677 28 100.0 32 ............................ AGCCCGAGTGCCTCCGGTCGTAATCTGTGGTG 502617 28 100.0 32 ............................ AAGAACCCCCTGTTAATCCATTGAGAAACCTG 502557 28 100.0 32 ............................ CAATGGGGTGATTGAATATTTTGCCATCAGAC 502497 28 100.0 32 ............................ ACCGCCGGGGCGGCTTCCCCAATAAAAAGGAA 502437 28 100.0 32 ............................ ATCTGGCGGTCGCGGATCAATGATGGACAAAC 502377 28 100.0 32 ............................ CACTGCTCCCGTTTGCGCTCTAAATATTTACG 502317 28 100.0 32 ............................ GCAAGCAGCTCAGGAATACAGAATGTGCAGCT 502257 28 100.0 33 ............................ GGGCCAACGCATATCACCGAAACGCTGGTTGTT 502196 28 100.0 32 ............................ TGCACGATTTCCCCCGGAGTGTATCCGTGTGA 502136 28 100.0 32 ............................ TGTCTGATCCGTTTCGCCCCCGTTTCGCTGTA 502076 28 100.0 32 ............................ GTAGAGGGTATCGACTGGGACGTAATTTTATT 502016 28 100.0 32 ............................ ACTCATCATCGTATAAATCTTTCATAGCCACC 501956 28 100.0 32 ............................ GCCCAGGACTCTTCGCCGTAGATGCCGCGCCA 501896 28 100.0 32 ............................ AAGTGCAACGGTTGCCAGCCCGCTGAATGAAC 501836 28 100.0 32 ............................ TGCACGCTGGGCAGTGCCCTGACCGGTGCGAA 501776 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 501716 27 92.9 0 .......................C-... | T [501697] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCAATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127237-128529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACUWT010000014.1 Escherichia coli strain BA1166 14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 127237 28 100.0 32 ............................ AACACCATAATAAGATTCGCCGTTTATAGTAA 127297 28 100.0 32 ............................ GCTAGGGGATGGATTGTTTGAGATACGAGCAA 127357 28 100.0 32 ............................ AAATGCGGCCAGCATATTGCGCTGCTCGATCG 127417 28 100.0 32 ............................ GGTAAGTGGGTTTTGTTATTTGACGGGGGAAT 127477 28 100.0 32 ............................ AGGTTGAGGCGACGGCAACTAAACTGCGTGGC 127537 28 100.0 32 ............................ CTGAATCGCACAGCTAAACACATGCACCGTGT 127597 28 100.0 32 ............................ ACGTTGTAGCAAAACACTGCCGGGCCGTGACT 127657 28 100.0 33 ............................ AGACTGCGGTTTCAATGCGGCGGATATTTTCGA 127718 28 100.0 32 ............................ AGCGAGGCTGCATACGTTGAGTGCCCACACTG 127778 28 100.0 32 ............................ AAAATTGCCGATAGCGGTTAGGTAATTGGCAT 127838 28 100.0 32 ............................ TCTTCTTCCTGTTTTACTCCCATATGCGGGAA 127898 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 127958 28 100.0 32 ............................ TGTACTGCCTGATGGTCGATAACCTGTCCGGA 128018 28 100.0 32 ............................ GTTCGAGCGCCCGGAGTTCACAAAACTACCCG 128078 28 100.0 32 ............................ AAAATTCATGTTCCGCTGCCAGTTCGCGGGGA 128138 28 100.0 32 ............................ TCTGAGCGTAAATCATAAGCTGGCTGATGCAC 128198 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 128258 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 128318 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 128380 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 128440 28 100.0 32 ............................ CGGCTGCACGAATTCGCGAGCGAACTGTTTCT 128500 28 85.7 0 ....................A...C.CT | T,C [128520,128524] ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGCTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //