Array 1 138100-136220 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGD01000081.1 Acinetobacter baumannii strain ARLG1858 ARLG1858_NODE_5.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138099 28 100.0 29 ............................ ATTCATATTCTATTAAATATTGTTTTTAT 138042 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 137982 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 137922 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 137862 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 137802 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 137742 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 137682 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 137622 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 137562 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 137502 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 137442 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 137382 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 137322 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 137262 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 137202 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 137142 28 100.0 32 ............................ TGACGGAGCGGTCTTGTCATTGGCGAACCCGC 137082 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 137022 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 136962 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 136902 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 136842 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 136782 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 136722 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 136662 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 136602 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 136542 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 136482 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 136422 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 136367 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 136307 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 136246 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CCATGGTATTTTTTTTTTAGATATCT # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47228-44919 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGD01000061.1 Acinetobacter baumannii strain ARLG1858 ARLG1858_NODE_32.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 47227 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 47167 29 86.2 31 ....G.......CC..............A TAGAGCCCTGCTCTATGTTGTCACTTCCGAA 47107 29 89.7 31 ....G.......CC............... CAAAGTGAATCGGCTCCTAATGCAAATGACC 47047 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 46987 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 46927 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 46867 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 46807 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 46747 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 46687 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 46627 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 46567 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 46507 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 46447 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 46387 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 46327 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46267 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46207 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46147 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46087 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46027 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 45967 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 45907 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 45847 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 45787 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 45727 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 45667 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 45607 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 45547 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 45487 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 45427 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 45367 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 45307 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 45247 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45187 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45127 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45067 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 45007 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 44947 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 39 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TGAATTCAGAAACATGCAATCGCGTTGATTACCGCAGCTTCGA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 470-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGD01000086.1 Acinetobacter baumannii strain ARLG1858 ARLG1858_NODE_79.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 469 28 100.0 33 ............................ AAATCCTATAAAATTTAAAAGTGTTGATTTTAT 409 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 349 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 289 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 229 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 169 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 109 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACTTTCAGC 49 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATAAAAAATAAAAAGATAAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5560-6007 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGD01000086.1 Acinetobacter baumannii strain ARLG1858 ARLG1858_NODE_79.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5560 28 100.0 32 ............................ CATTTCCCACCATGCGAACATGCGTGTAACCA 5620 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 5680 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 5740 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 5800 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5860 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 5920 28 100.0 32 ............................ AAAAAGAAAGTAATACATTCCCTATTGATAAA 5980 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TGATAGTATGAATGCAGCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //