Array 1 2304358-2306704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2304358 29 93.1 32 .G......C.................... CTGGTCAAGGCCCTGGTGGAGTCGGGCGAGCT 2304419 29 93.1 32 .G......C.................... ACTGGTCCTGACCAGCAAAAACGCCCCGCCGG 2304480 29 93.1 32 .G......C.................... CCCTCGCCGCCGACCGGCGCCCGGCCCGCCTG 2304541 29 93.1 32 .G......C.................... CACTAACTAGCTGTGGGTCTGTGACGCGGAAA 2304602 29 93.1 32 .G......C.................... GCGCAGTGAGGTGCGCCGCTGCTTCACCAGCT 2304663 29 93.1 32 .G......C.................... GACGGCGAGGAGGCGTTCGACCTCATCACCGC 2304724 29 93.1 32 .G......C.................... GCGGTCGGCCATCTGCCGCCAGGCCGCGTCCA 2304785 29 93.1 32 .G......C.................... TCTGCTTCCCACGCGGGGGGCTGCCAGGCTGG 2304846 29 93.1 32 .G......C.................... CTCGCCCCGGTCAAGGCCGCCGCGTCGGCCGC 2304907 29 93.1 32 .G......C.................... GGGCAGGGAACCCACTCCCCGCCCCGCTCTCA 2304968 29 93.1 32 .G......C.................... ACTGGGTGGCGGAGCCGACCGTTCGGGCTGGC 2305029 29 93.1 32 .G......C.................... GTCGATGACCTCACTTCTCGACGGGCCCGGCG 2305090 29 93.1 32 .G......C.................... GTGCATGATCTGCTTCGACGTCATCCGCTGCC 2305151 29 93.1 32 .G......C.................... GCGTCGGGCGGTGGCGTAGGCGATGTCCCCGA 2305212 29 93.1 32 .G......C.................... GCGGTCGACGGTGACGTACCGCGCGCGGCGGG 2305273 29 100.0 32 ............................. TCGGTGAGGCCCGGTAGGTCCGGCCGGCGCGC 2305334 29 100.0 32 ............................. CCCGCCGTCGCGTTCCCGCTCTGCCCTGGGGC 2305395 29 100.0 32 ............................. CCCACCGGTGTCTCCGCCCGGGCCCAGGACGT 2305456 29 100.0 32 ............................. GTCGTCACCGCTGCCTACGTGCGGGAGGACGA 2305517 29 96.6 32 ............................T GCCGGGTGTGGCGGCTCATTACCCGGCGCCTC 2305578 29 100.0 32 ............................. AGCGCCCCGCCGCTCCAGGCTGCCCCGCCCAG 2305639 29 100.0 32 ............................. AGGATGGACCAAGTCCGGCCGCTGGTGAGCCT 2305700 29 100.0 32 ............................. AAGTCGGGCCCGATGGCCGCATGCCACACGGT 2305761 29 100.0 32 ............................. GCGGACCGGGCCGAGCTGCTGGAGGAGATCAA 2305822 29 100.0 32 ............................. GCCACCGGCTCGGCGGTCACCGGCGCGGTGGG 2305883 29 100.0 32 ............................. GATCGGGAAATGCTTGTGTGGGTCGATGAGGC 2305944 29 100.0 32 ............................. GCCTCCGCCACCCCGACGCTGACCGACGAGCA 2306005 29 100.0 32 ............................. CGCTGTCCGCGGTCGGCGGCTTCGGCGAAGCG 2306066 29 100.0 32 ............................. AGCGGCCGGAGAGCACCCCCTCTTCCGCTGGA 2306127 29 100.0 32 ............................. GTCTCGGCTCCTCCGACATGGCCGCCGTCCTC 2306188 29 100.0 32 ............................. CCACCGAGGCCAACGCCGACAGCGAGAAGATG 2306249 29 100.0 32 ............................. AAGGTCGTCACCGAGACGACCCTGAAGGACGA 2306310 29 100.0 32 ............................. GGGACGGCGTCCCAGTCGCCCCATCGGAAGGC 2306371 29 100.0 32 ............................. TATCAGGACGATGTGGAGATCCCCGAGTGGGC 2306432 29 100.0 32 ............................. CAGCGCGCGACCGGGCACCCGCTGTACGCGCT 2306493 29 100.0 32 ............................. CCGGAGTGGCCGTAGCCTTCCGGCAGGAGGTG 2306554 29 96.6 32 .....................A....... CAGCCCTCGCAGATCCGGCGGGCCCCGTTGCG 2306615 29 96.6 32 ........C.................... ACCGCAGGGGAGTCGAACCGCGGCACGCACAA 2306676 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 97.1 32 GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Left flank : CACCGAAGGACGCCTTCGCCCGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGTGCTGAACCTGAAGGACGAACAGCCGACTCCGGTGCAACGGTTGCGGCTACTGGTGTTGCGTGGGGACCTCGCGCAACGGCTGGGGGACGCGGAGGGGGCACGGGGGTGGCTGGAGGCGGCGGAAGTGGTTCGACTCACGGCCGAGGAGGAGGCCTTGGCCCGTGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCGGCCGATGGGGGCTACCCCTCCAGGCTCGGCGGGGGCGCCCCCTTACGACTCTCTGCCGAACCAGTCGCCATGTGGACGGCTCACGAACCAACTGCGCCCGGCCGCCCGCTCTGTGATCATGTAGAGGTGAGCACGCAGCTTAAGGGTCAAGGACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : GCTATACCAGAGGTCGGCCCGGCGCCGGGTTGGGCGGCATCTTCGGGGCGCCGGAGCCGTGGTTGCCCATCTCGATCCGCCGGGCGCTCAGCCCGTACACACCGAGCGGCGGGAAGAGGTCGACGCGACGCGGGCAGTTCCCCTCCGCGCACTCCTCGCAGAGCAGGTCCCGGCCGGTCGCCGTGCGCCGGGCCGCAGTGACCGGGGCGGTCCAACATGCCTCGCAGGCCCGAACGTCCGTCGCGGACAAAGTGACGGTCATCGGCGCCGCCCGGGCGCCCCGGGGAGGGGATGGGCACGCATGATGCTGCCTCCGTTCTCATGGATGGGTGGTGACCCGCCCGGCCGCGGTCCTTGCACGGGTTGCGCGGCCGGGCGGGAGCCTGCAAGAGGCGGTCCCGGGCCCGCCGTGACCCGGGGGCGGGGTTCAGGAGTCCGCGTACGGACGGGGCGGGCCGCCCCGCCGGCGTTCCCTGTCCGTGCACGCCGCGCAGAGGAAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Alternate repeat : GGGGTCCCCGCGCGAGCGGGGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2311344-2314049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2311344 29 100.0 32 ............................. ACGTGCCCGACCACCTGATTCCGCAGGTGTTC 2311405 29 100.0 32 ............................. GAGACCACCACCATGGCACAGGCCATCCAGGA 2311466 29 100.0 32 ............................. CGGCCGGGCGATTCGGCGGCGGCGGTGGCGGC 2311527 29 100.0 32 ............................. CCACATGGTGAGGGTCGGGGAGATGTCGACGG 2311588 29 100.0 32 ............................. CTCGTCCGGGTGTCGCTCCAGCTGCTCCAGGA 2311649 29 100.0 32 ............................. TGACCATGACGAAGGCTCAGCAGCTCAAGACC 2311710 29 100.0 32 ............................. GCGGCCCTGGACGGCCTTGAGTCCATCGCCCG 2311771 29 100.0 32 ............................. TGGGCGTTGAACCTCGGCGCGGACGGGCTGGA 2311832 29 100.0 32 ............................. TGTCGAGCGAGCTGTGTCATGACTTCGTTACG 2311893 29 100.0 32 ............................. ACCTCGAAGTGCCCGTCGTCGTCCTCGCCCAG 2311954 29 96.6 33 ............................A GTACGGGGTAACGAACCGAGCCGCTGGTGACCT 2312016 29 100.0 32 ............................. CCATGATCCGGAGTCCTTGGCGGCTTCCTGCT 2312077 29 100.0 32 ............................. TCCCGGGGCGACGGGTGGCCGGACGTGATCGC 2312138 29 100.0 32 ............................. CCCCTCGCCTCCATCATGGGCCAGCGCGAAAG 2312199 29 100.0 32 ............................. CTCCTGGAGATCGCAACGTCCATCCCGGTGTT 2312260 29 100.0 32 ............................. GGCCACTCCGGCCCCTGCGGACTGCCCCCGGC 2312321 29 100.0 32 ............................. GAACTCGGACGCACCGGCCGCAGCGTCGGTGT 2312382 29 100.0 32 ............................. ACCATGGCGCGCACCCTGTACGGCTCCCCGTG 2312443 29 100.0 32 ............................. TACCCGGCGGGCAGTCGGTCGGCGACCGCCCG 2312504 29 100.0 32 ............................. CCCTCCACCGTCGGGGGCGCATCGTCGAAGCG 2312565 29 100.0 32 ............................. GTGGCGGTCAGCATGCCGCCGACCTCGCAGGA 2312626 29 100.0 32 ............................. GCCCAGGGGGCGGCGGGGGGTCTCCTGCTCGG 2312687 29 100.0 32 ............................. GAGCCCCCATGCCCGAGCTGAGCACGGCACGC 2312748 29 100.0 32 ............................. CGCAACGTCGAGGGCACCGATCCGGGCGAGTC 2312809 29 100.0 32 ............................. ATGCGGGAGCCGTCGTGGGATGACGCGGAGGT 2312870 29 100.0 32 ............................. CACCGGATCGTCCAGAATCCCCGCCGTGTACT 2312931 29 100.0 32 ............................. AAACCGCAGGTCAGGGCGAGGATGCGGGCGAT 2312992 29 100.0 32 ............................. GTCGAGCTGTTGCGGCTGTTCTTCTGGACGTC 2313053 29 100.0 32 ............................. CCCGTATCGCCGTTGCCCACACCTTCGCCCTG 2313114 29 100.0 32 ............................. CCACGCAGACTCGCCTCGCGCGTGGTGCAGAT 2313175 29 100.0 32 ............................. CTGGTTGTACGCGCTGCTCAGCCGCTCGGTCT 2313236 29 100.0 32 ............................. CTGGTTGTACGCGCTGCTCAGCCGCTCGGTCT 2313297 29 100.0 32 ............................. GCGGCCAGGCGAGCACCGTGGCGGCGGCGCCC 2313358 29 100.0 32 ............................. ATCGCGAACCCCCGCTCAGACTTTCCGCTCAG 2313419 29 100.0 32 ............................. GTCTCGGCGGACGCGTCGCAGCCGGGGCAGGA 2313480 29 100.0 32 ............................. AACTCTCCGGTTTTGATGTGTGCGTAGGCATC 2313541 29 100.0 32 ............................. CCCCAGGTCAAGCGGGGGCATACGGCCAGTCA 2313602 29 100.0 32 ............................. GCGTACATCGCAGGTCTCCCGGGCAACAACCG 2313663 29 100.0 32 ............................. CCCATCCCTGTACGCGCCACCATCCTCTCCGC 2313724 29 100.0 32 ............................. ACGCTCCAGGTCCGCCCGCGCGGCCTGGGCAG 2313785 29 100.0 32 ............................. GAGCCGACCGCGCCGTCCCTCCGCGAGGATCC 2313846 29 100.0 29 ............................. GCGGCGGCCACGCTGTAGGCGGCGCTCGT 2313904 29 96.6 32 ..................T.......... GAAACCCCCCATGACCGCTCTTCCCGGGCAGC 2313965 29 89.7 29 ......................C.GC... CTGACCCGTGATGGTGCGCGGCGTGGGTG 2314023 27 89.7 0 ........--..................A | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.4 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCAATTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGGTGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCACGACTCTTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGGCTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTTAGCAGGCAGGAGGGGACGCGGGGGACGTAGGCGCATACCTGCACAGCGCCTTGCGGTATGCCAACGCAAAGCGCTGCCCGTGCAGCAAGACGTTTGCCGTCGCTGACTGTTCCAGCTCTGTCACCATGTCAGGGTGAGGACGGCAGGCATGAGTCAAGAATTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGA # Right flank : AACTTCGCCAATGCGCTTAAGGAGCGTTCTGTGCCAGCAGGGCTGTTCGATATCTCGGGTGGCACGGCGACTTCAGGGAGTCGTGCGTGCGGGACGATCGGGTCGTGCGGGCCCGTACTCTGCAGCTGCGCGTGGAATCGCCAGTAGAGACAAGGAGGGGTGCGGGGAGTGGAGGGTGGGGCACCGTGGTCGACGGCCTTGGTTCGACAACCGCTGTCGGCTCATGCCTTCGTGACGCGCGGGTGGCCTGCGGAGATGCCCGAGAGCAGACGAACGCCACCGGCGTTGTCGGAGACGCTGGCGGCGGTGACCAGCACGGCCAGGAGGAGGTGGAGTGTGTCGACGCCGATGTGACGTTCGCGTCCCGCGATCTTCTGCCCGCGTCCAGGCCCTTTCCTCTGCGTTCTGCTCGTCAGGCTGTCGGGGTGGGTTCGAGCAGTTCCCTACGGGCATCGGCCAGGTCACTCGGGTACGGCCACTGTCGGCGAGGCATGTTTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3029205-3028322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3029204 29 100.0 32 ............................. TGGACTGCACTGCGCGCCACGCACAGAACATC 3029143 29 100.0 32 ............................. GGGCGTGGAGTGAGTTCGGTCATGCGGGCTTG 3029082 29 100.0 32 ............................. GAGACGAAGGCCGAGGAGCTCAAGCACCACAC 3029021 29 100.0 32 ............................. CGGCGGCCGACGGTGATGCTGCGCCCGGAGTA 3028960 29 100.0 32 ............................. ACGGCCGCCGCGTAGGGGTCGTTCTCGGCGAA 3028899 29 100.0 32 ............................. CAGCCCGTCGCCCTGGCCCTCGACTACACCGC 3028838 29 100.0 32 ............................. TTGTAGTCGTCCTCCGGGCCTTCGGGGTGGGT 3028777 29 100.0 32 ............................. GAGAAGTCCGGCTTGTTGTGAACGGAGCCGAC 3028716 29 100.0 32 ............................. ATGGTCAAGAAGCGTGGCTGGAACCTCTACAA 3028655 29 100.0 32 ............................. CCGACGCTGCGTGGGGCCGTTTCGCCCCCGCC 3028594 29 96.6 32 .........................C... TCCAGCAGCTCCGGGCCCTGTTCGCCCACCCA 3028533 29 89.7 32 .............GT..........C... TTCGACCACGTCGGCATCGTCGTGCCCGATCT 3028472 29 89.7 32 ..............T..A.......C... CGCAGCCCGTTCGGTACGAGGGAGAGCAGCCA 3028411 29 93.1 32 .....................G...T... GACCTCTGGGAGGACAACCTGTGTCGGTGGCC 3028350 29 79.3 0 A...........A...........CCAT. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.6 32 GTGGTCCCCGCGCACGCGGGGATGGACCC # Left flank : CACCGCCCTCACCGCAGGCCTCCCCGCCGAGATCAACTCCCCCATCGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACCCGCCCCAGCCCCGCCGCTCCCTCCGGCCGCGTCCTGGTGGAATGCGCGGAGTGCGGCACCCCGGGCCCCTCCGAGGCCCTTCCCGACGGTCTCTGCCGCCCCTGCCGCGAAACCTGTGCCACCGGGCCCGGCGACCCGTCACCCGCCCTGCCCGCACCACCGGACATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCCGCCGATTCAGGGGAATGGGGGTCGGTCCTGGTGACCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAGCACGGTGGGGGATATGTCCGTTTCTCAAGAAGTGAGTAAAAACAGCACCCTGACCGGATAGACCCGCAGGTCACGAACT # Right flank : TCAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCGGCCGTTGGACAGTGTCCGGCCGATCACGACGGCCCGCGGAGAGTCGGGCCGCACTTGCCTGACCACCAGCCGTCACGGCACGGATACGGCGCCCGTATCATCCCGCCATGATCATGCTATCTGTCGACCCCGCCTCGCGGAGCTACGCCGATGGCCAGGCGGTGGGGCAGCTTCTGGTTCTCGCCGTGGCTCTGGTCCTTGTCTGGGTCGTCACCCGGACCTGGCGGCGAGGTCCGGCCCCGGACGGTCCGGACGACGTGGAGAGAACCACTTCCATCGCCGTACGGCGTGGCAACATCGTCCGCGGAGTACTGCTGGCCATAGCCGCCGCCGGGCTGATAGGGATCTTCACCGGCAGGGGATACCAACCTGCCGCAGAGGCGGCCCCCACCGCCCAAAAGCCTGTCGCCCAGTCGCCCTCCGCCACGACGGGGCCTGCGGAGATCAAGCGCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3887358-3886475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3887357 29 100.0 32 ............................. GAGCAGTGGCAGAGACGCGCCGTCCAGGTGCT 3887296 29 100.0 32 ............................. CTGACGGCCGCCGACTTCGCCGACCTGCCGAT 3887235 29 100.0 32 ............................. CCGCAGTGGTCCGGCAACGTCCTGATCAACGG 3887174 29 100.0 32 ............................. ATGCGCGACATCCCGAGGAAGCGGCACAGGTA 3887113 29 100.0 32 ............................. GCCCCGATCGTCATCAGTACGAGGTTCCGCAG 3887052 29 100.0 32 ............................. GGCGCGAACGTCATCGGCCCCATCAACGGCTA 3886991 29 100.0 32 ............................. GGGTCCGGGGCACCACCACGGCGCTGTGGGTG 3886930 29 100.0 32 ............................. CTCACGGGCATCCGGGGCCGCGTCGGCTACGT 3886869 29 100.0 32 ............................. TCGGTGACGCTGCCACGCCCGAGGCTCACGCC 3886808 29 100.0 32 ............................. ACCTCGGCCGCCGTGAACTTCCTCGTCGGCGC 3886747 29 100.0 32 ............................. TCAAGGGCGGCCGCCACGCGGTGAAGCCGGTA 3886686 29 100.0 32 ............................. AAGGTGGGCCAAGCCATGGCCTTCATCTACTG 3886625 29 100.0 32 ............................. CAGGTATACGCCGCCCCGGCCGACGGCCGAAC 3886564 29 100.0 32 ............................. ACCGCACCCTCGTTCTCCCCCGACACCGGCCG 3886503 29 89.7 0 .....................A.AG.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GAACACCTCGCCCGACACTCCGGCCCCGACCGCCCGCCGCATCCTTATGGAATGCACCGACTGCGGCCGCCCCGGCCAACCAGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACAGCACGAAGCCCGGTGAACTCCCGGCCCACCCCACTGAAGCCGCCGACGTCAAGGCCCGCATGAGTAACCTTCGCGACCTGCTCAGAACCGTCTGAGGCTGAAGCCTGCAAGGTCAGTTCGCGCCAGCAGAGAGCGCGGACACGTATCGGGGCACTGGCGCGGCAACCGTTCGCCTTCACAGTTTCCTGGGCAGATGCCGCACGGCCTTCCTTGAGGAAGGGGGCGCCCCCCGGGGGTGGTTGGCGGGCAGAATGACCCCTGGCATGCCCAGTCTCGGGTAAGGGCTGGTTGCAACGCGGGAGAGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGTCACGAACT # Right flank : GGCCGCCCGAAACCGGAAATCGATCATGTTCTGTCGAGTTCGAATCACTTTTGAACAACTGGCCCCTACAGGGCATTTCCGCATGTCAAATGCCCACATGCCCGCGATCGACACGGAACTCCTCACAGCGTTCCGCCACCTCTCCCCCACCGCCCGCACCCCCTGGGGCAAGCACGATCGGCCGACCGAACAGTGGCTCCCCCTGTGGCGGCACATGGCCGACAGTGCAGCCGTGGCAGGCAGGCTCTGGGACGAGTGGGTGCCCGGCAATGTGAAGGAACTCGTCGCGGGTGCCTTCCCCCAAGGGGCCGACGACGCATGGCGGGTGGCCGTTTACCTCGCCTGTGTGCACGACATCGGCAAGGCCACCCCCGCCTTCGCCTGTCAGGTGGACGGGCTCGCGGACCGGATGCGGGCGGCCGGGCTCGAGATGCCGTATCTGAAGCAGTTCGGGACGGATCGCAGGATGGCTCCGCACGGGCTGGCCGGGCAACTGCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4069378-4069165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4069377 29 100.0 32 ............................. TGGAACATCTGGCCCGAGGTCGCCCGCCACTA 4069316 29 100.0 32 ............................. CGACGTTCCCGCTTGCGCGGGTAGTCGGCCGG 4069255 29 100.0 32 ............................. GCCTCCTCCATGTCCCGCATCCGGTTTATCAA 4069194 29 89.7 0 .....................AC.....G | A [4069168] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGCGGCCATCGACTCCCCCGTGCGCTTCCTCCGCCACCGTCTGACGACCAAGACCCCACCCCAACTCCCCACCGAAAACACTGGATCGGGCACCACCGCCCCCACCGCCTCCAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAACGGGGCCGTAGACCCGTCACCCGCACCCACCGAGGCACCGGACATCAAGGCCCGCATGGCCAACCTCCGGAACCTCCTCAGAAGCGTCTGAGGCAGGCGACGGCGGTTCAGCATCGATTGGGCGGCCTCCTATCCGGGAAACGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGTCTGCACGGCGAGGGAGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCTTACGCCGCATAAAACCGCAGGTCACGAACT # Right flank : CCTCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGGAACCCTGCTTGTCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGCTCGGCGGCGAACCCGGTCCCGTCGATGGCCGCCAGGGGGCGGACGCCGATGCCCGCGTTCGTCGCGAAAGCGGCCACCATCACGCGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGGTGTTGGGCGGGCGGCGTCGGGTGCTCGCGCAGCAGGGCCATGGTGACGCCGGGCAGTACGCCGGATCGTGGCCACAGCACGGTGCCGTCCCGGTCGATGAAGCCCACGTTCCAGGTGGCGCCCTCCGTCACGTACCCGTCGCGGCCCACGAACAGCGCGTCGTCGTAACCGGCGAGCTGCGCCGCGCGCCGGGCGTGCAGGGCGCCGAACAGCCCGGTGTGCTTGACCTGGGGGAGGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4398466-4397766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4398465 29 100.0 32 ............................. GGCGAACTTGGTGACCGCCGCGCCGGACGGGG 4398404 29 100.0 33 ............................. ACCAGCCAGCTCGCCCGGGGCTGCTGGAGGTCG 4398342 29 100.0 32 ............................. AAGGCCGGAGAGGTCTCCGGCTCCACGGGCGT 4398281 29 100.0 32 ............................. TTCGCGTAGGCGTCGACGGCTCGCTCCAGGCG 4398220 29 100.0 32 ............................. GCGACGTATCCCGCCGAGAACGCGATTGGCTT 4398159 29 100.0 32 ............................. CAAGACCGAGACGACTGAGGCCGAGGAGCCGA 4398098 29 100.0 32 ............................. TTGGTGCGGGCCGGCAGCGACGGCGGGCTGTT 4398037 29 100.0 32 ............................. TCGTCGCCGTCGTTCGAGGAGGCGAGGGTCTG 4397976 29 100.0 32 ............................. GCGCCTGCCGTGACCGCAGCCGACCGCCCGGA 4397915 29 100.0 32 ............................. GGGACGTGCCGAGGAGCCCGTCGGCCGACGGG 4397854 29 100.0 31 ............................. CGGCATACGTCGAGGTGGGACGGAAGGTCGT 4397794 29 82.8 0 ...............A.....CCCC.... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGGTCCCCGCGCACGCGGGGATGGACCC # Left flank : TGACCACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCCATCGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACCCGCCCCACCCCGGCCACTCCCGCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACACCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGGCCCGGCGACCCGTCACCCGCCCTGCCCGCACCACCCGACATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGAGCCGCCGATTCAGGGGAACAGGCATCGGCCTTGGCGACCGAGGGGCAGAATCACTTCCGGCAGGCGACCGGTCCGCCAACGGCGATCAGAACGGCGGGGGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCACCCCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : GATCCGGCTCTCCGCCACTGCCTGCCTCCGCCGGATTCGCGGTGGCCGGGCCTTCACCGTCGGCCTCTCGACGGTGAAGGCCCGGCAAGTGGGTACGGTTGAACGGCAGTCGGCCGGCCAGGCCGGCCGGCCCGAAAGGTGAGCGAGCTAGAGGAACCGCCCCGTTCGCGGTGCTCGTCGTCGCCTTCGTCCAGTGCCCGTGCCGGTCACGCCTTCGTGAGATATTCCAAGAGACGGAAGTTGGCGTTGCTGCCGTTGCTGACGAACTCCAGGACACCCAGCTCGGTGCGGATGAGACCGGCCTCCTCCTCCAACTCGGCCAGCTTGTCCCAGTCGCCGGAGTCGTTGAAGCCGAGGAAGAGCCGACCGCCGTCGGTCAGGTGCCGGGGGCCGTCCACGAGGAAGGAGCGGTGGGAGACGTAGCCGGCGTCCATGATGGCCCGCTGCATGTAGTGGGTGTAGGTGAAGTTTTCCGGTGCCAGCAGGGCGTTGGAGTCCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4400283-4400070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4400282 29 96.6 32 ...A......................... TCGTGGATGAGAAGGTCGCCGGTGCCGAGGAG 4400221 29 96.6 32 ...A......................... TGCCGACGCTTTTCAAGCTGGCGTATTGCTGG G [4400204] 4400159 29 100.0 32 ............................. GGGACGCTGCTGGTCTACGACGAGATGCTGAC 4400098 29 86.2 0 ......................CATC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Left flank : TGCCAGGGGAGGAAATCGCCATCAAACTTGCCGGATTGCCCGGCTGGGCACGAGAAGGGGACGCGATCACCCGCACGTTTGGGATCCGCTACCACGGCGGCGTCGCGATGATCGTGAACGTCGCGGACGTCGAACGGCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTGAGGTTCCGCATCACGACACACGACGCCGGACACCGCCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCGACGGCACACGAAGCGCAACCGCACAACTCTTGATCACGGCACCCGCGTTGTACCCGCAATGTTCGGTGAACGGCCTTTCGGCGGTGAAGATGAGGCACTCTGGGCGTGCGGCCGGGAGAAGCCCCGTCCGCCGCATTCAGCCTCGGGACATATGCAGAGAAAGGGGATATTTCCGTTTCTCTGGAAGCAAGTAAAAACATCCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCCTTGACCGTCTCTCGGGTCTCAAGCTTCGGGTTTCGAGGACGGTTCGTTCACTCTTTCTCGTGTACGGGTACGGGGCCCGGCCCGAAGCTTGGGCTCCGAGACCCGGGCGTCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGTAGGTAAGGGAGGGGGTTTGGGAAAACCTCCCGCCCTCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGGGTGTCACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGTTGGAAGCACCAGGCCGGGGTCTAACCGCAAGATCGCTAACGATGAAGGACGATCCCGTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCCCCCGCACTCTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCGGCACCGGACCAACTGCCCCGCAGCGCAAAGGATTTTGCCTTACTGCCAACGCGTGAGCGG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4409701-4409489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024957.1 Streptomyces cavourensis strain 1AS2a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4409700 29 100.0 32 ............................. AGATGTTCGGGAAGCCGAGGAAACGGTGCCAG 4409639 29 100.0 32 ............................. AGCGCCTCCGTCACGTGCTTGCCGCCACGCAC 4409578 29 100.0 32 ............................. CGGCCACCACCCGGCGTACCGTGACCAACCCG 4409517 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGGTCCCCGCGCGTGCGGGGATAGCCCC # Left flank : CACCCCGAGCCTTTCCTCGACCACTACCAACTCCTGCTCCCCAGCGGGTGCTTCACCGAGCCACTGCTCCAGCCGCCCTTCCTCCTCCAGCAGATCCCACTGGTCCTCGTCCAGCAGGTCGGCCAGTTCCCGGTCGGAAGCCTCCTCTTTCATGTACCGCTCGTCGTACTGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGGACGTCAGTAACTTCACTGTCTTCAGGCTTGGTTGTCTCATCCATGCGACTCATGCTCGCAGGCGCCTATGACAACGCCCCTACCTCCAGGGCGGCGGACCGGAGGCAGGAGCCGCACCGACTGGGCGTGGCTGGCGCTCCTGTGCCACGCGCAGCACCGAGGAAGGGCAGAATCACTCCTGGGGTATTCGGCTCAAGCAGGGGCCCTTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCCAAAACAGCCCCCCAGCCACATAAACCCGCAGGCCACGAACT # Right flank : GAAGCTCACAAGGCCCTCAGGACCCGCCGTACCCGAATGAAGCCATCGGGCGTCGGCTGACGGCCTGCCATGCTTCCGTGCCGCCCACGACCCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACACGTAACGCCGTCCTCCTCCGACTCGTTGTCGCGAGAGGCGAGAGACATGGGTGGTCGACGCCCGCGGAGCCCAGGAGGCTTGGGAATCATGATCGAAGAGGGCGGCCCCGGGGGATGCCCGGCATCGCGGGAGGAGCCGCGCGTCGCGCACTCCCGTACGCTGCGGTTCTGGCTCGATCCGGCGAATATCGCGGTGCGCCTCGGCCAAGCAGGCCCCGTCGCCCGGACGAAGGCCGGACCGGCGGTCGCCTTCCAGGTCAACGACCCGTCGCTGCTCAGAAAAGTCGGCTGCGGGGAGGACACCTTCCAGGCCTGGAGCGCGGACCCGTGCCTTCGGGACTTCACCGGGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATAGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //