Array 1 107405-111096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWTC01000004.1 Kocuria rhizophila strain TPW45 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 107405 28 100.0 33 ............................ CGGTGTCTTGTCGATCTTGCACGCGAACTCGTA 107466 28 100.0 33 ............................ CGAGCACGGGGTGCGCACCGGGCCAAGTGTGGC 107527 28 100.0 33 ............................ GGAAGACAGCTTCGGATGTGGAGCGGGCCGAGG 107588 28 100.0 33 ............................ CCCCGCGCATCTCTTCCCGGGCGACCAGACGAA 107649 28 100.0 33 ............................ CGCCTCTGGGAGTTCCCGCCACCAGTCCACCGT 107710 28 100.0 33 ............................ CTCGACGACCTCGCGGACCGGGTGGACACGGTC 107771 28 100.0 33 ............................ GCAGCTCGAACTCGTCCGTCAACTGAAGGAACT 107832 28 100.0 33 ............................ CAGCATCAGGGCGACACCCACGGGCACGAGCAG 107893 28 100.0 33 ............................ AAGTCCGGGGGTGAGGACGGCGACACCGGAGGG 107954 28 100.0 33 ............................ GTCAGCGAACTCGGCTTCGCTGGCGATCCACAA 108015 28 100.0 33 ............................ GTTGAGTTCCACGAGGTCGCGGATGACGTGCTC 108076 28 100.0 33 ............................ CGCCAGACGCTCGGCTTGCAGACGGGCAATCAA 108137 28 100.0 33 ............................ CGCGGCGTTACGGGCAGTAGCGGGCCCGACCGA 108198 28 100.0 33 ............................ CAGTTCTACCCAACCGACTGCCCTGGACGGTGG 108259 28 100.0 33 ............................ CGTCACCGGCTCCACAAGATCATCCATACGAGA 108320 28 100.0 33 ............................ CTTCGGCTTCGCGGTGAGCTGCTCCGAGTGGGA 108381 28 100.0 33 ............................ GTTCTTCCGCATGGACAACGACCGGGGCCTACC 108442 28 100.0 33 ............................ TCGACCGTTTCATCCGGGCACCCAACGGCCCAG 108503 28 100.0 33 ............................ CCCATAAAAAACTGGGACGAAATTATGACTTAT 108564 28 100.0 33 ............................ CCTGGTGGATGACGTTCACGAGTTGGTCCACGG 108625 28 100.0 33 ............................ CGCACTGAGGTAATCGAGAAGCACAACACGATC 108686 28 100.0 33 ............................ GCGACCACCGTAGACCCCGGTTCCAAATGGTTG 108747 28 100.0 33 ............................ CGTCAGGACGCCACCGCCCAGCAGCATGAGACC 108808 28 100.0 33 ............................ GATCTACGTGGCCGACCTCGAACCGGACACCAC 108869 28 100.0 33 ............................ CGCCGGGCGGCGAACCGTCACGGCACGAGGGAA 108930 28 100.0 33 ............................ CTAACCGGACACCTTGTGGTAACCGGGTGTGTT 108991 28 100.0 33 ............................ CGGCCAGAACATGGGGCCAGCCCTCGCGAAGGT 109052 28 100.0 34 ............................ CACCACCCACTGCGGCACACGGGTCACGGACGTG 109114 28 100.0 33 ............................ CGGCCTGCTGGGCCTGGAGGTCGTCATCAACGA 109175 28 100.0 33 ............................ GGAGACTGACTCATGGCAACGATTGGCGCCGCT 109236 28 100.0 33 ............................ CGCTGGGCCGATCGACGCGGATGACCAGGGGAT 109297 28 100.0 33 ............................ CCGTTCAGGGGTCTTATCCAAACGCCACAACCG 109358 28 100.0 33 ............................ CGCACGGACGGCTGGTAGTCGCCCGGCAGAGTG 109419 28 100.0 33 ............................ CCAGGACTCCACAGCGAACGACCTGTGGGTGAA 109480 28 100.0 33 ............................ CTGGTCCCGCACAGCGTCCGTCTGGACCTGCAA 109541 28 100.0 33 ............................ CCGTGCCCTGGAGAACGGGGAGGAGTGCCTGTA 109602 28 100.0 33 ............................ CACGCAGACGATTGCTACCGTCGGGCCTACACA 109663 28 100.0 33 ............................ GAAGTGAAGTGACCACCATGACGTTCCTGGCGG 109724 28 100.0 33 ............................ CACGATCTCCACCATGCCCGCGTCAGCCTCGGA 109785 28 100.0 33 ............................ CGGGTCGAAGACCGGCGAGAACCTGGAAAACAA 109846 28 100.0 33 ............................ CCACCCGATCTTGTTGTAGGCGATCACCAGGGC 109907 28 100.0 33 ............................ CGTCCTCGCCAACACCAAGATCAGCAGCCGCCA 109968 28 100.0 33 ............................ GTCCAGCCGACGGAAGTTCGAGGCCGAGAATCC 110029 28 100.0 33 ............................ GGACCCGGGGTCGGAGACGGAAGCTGCGGAACG 110090 28 100.0 33 ............................ GGTCATCGTCTCCCCCACCGCACCAGTCCCGGA 110151 28 100.0 33 ............................ CGGGCGGGCCGGCATCTTGTTCGTGCCCGCCTG 110212 28 100.0 33 ............................ GTCGTTGGAGGTGCGCCGGGAGATCGTTGGGTG 110273 28 100.0 33 ............................ CTCGACCGTGCAGGGCGCGAAGTGGAATGACCT 110334 28 100.0 33 ............................ CGAACCCATGACCCAAGAGCGACTCGACGCGAT 110395 28 100.0 34 ............................ CAGTCGCCCGTACCCGGTGATGGTGGACTCCGAA 110457 28 100.0 33 ............................ CCAACGAATGGGTTGGCGTCCATGGCGAACTCC 110518 28 100.0 33 ............................ GGAAGTGCACCGTTGGTTGGTGAACGGCTTGGA 110579 28 100.0 33 ............................ CGCCATGGACACGACCACGAAAAACCTGGTGGT 110640 28 100.0 33 ............................ GCGTGGGCAGCGCATTGTCCATGCCGACCCAGC 110701 28 100.0 33 ............................ CGAAGCCCTGTGGTCCGGGTCCGCGGAGACGGC 110762 28 96.4 33 ....C....................... TCAGGCGGGCTGTGATCGGGTCCTCGGTGTTGA 110823 28 100.0 33 ............................ GCAGTGGCTGACCGGGGACAAGCAGGTCTCGGT 110884 28 100.0 33 ............................ CTCGGGAAGGCCAAGAGCGCCCTTTCGGGAATG 110945 28 100.0 33 ............................ CCGGTCGGCGGGGTAGGTGTATCCGATGGGGGT 111006 28 96.4 33 .C.......................... GAGCTGCTCCGGGTTGGCGCCGTTGCCGGAACC 111067 28 96.4 0 .....................G...... | TA [111091] ========== ====== ====== ====== ============================ ================================== ================== 61 28 99.8 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CGACGACGCCATGTCGCTGTGGTCCGGTCGGCATGAAGGCCGCATGCCGACGGGGCAGAACTTCTCTCGGGAGAACTCATGATCGTCTTGGTCCTCTCAGCCTGCCCGGTAGGGCTTCGTGGGGACCTGACAAAATGGCTGTACGAAGTCTCTGCCGGAGTTTTCGTGGGTAAAGTCAGCGCGCGGATTCGGGAGCACCTGTGGGAGCGAGTGCTGGAGTCATCTGGCTCGGGGCGGGCCATCCTCGTGTGGCATGCCAGGGGCGAGCAGGGCTTGACGTTCTCTGTCAAAGACCACCACTGGGAACCGGTGGACCTCGATGGGGTGACCTTGATGAAACGCCCCTCGCGCACCAAACCCCGATCTTCTCCCGAGCTCAGGCCGGGGTGGAGCAAAGCCGGTGCTCGTCGCAGGTTCGGCGGCAAAAAGACCTGACCGCAAAAGTGTCGAAGTCAAAGGAAAAACGCCCCTCGGGGGACAATAACCCCTAGTCACCAAGT # Right flank : CCCTCAAGGGCTGCTGAACCTGACCGTGAAACTGCGTCCTCGCCACAGAGGGTCAACTGCAAGGGGCACGCCATCTCCGGTCAGCGTGAAGCGACCCCCATCAGGCTCCTCAAGCAATTTAGTTGTGGACAACAAAAACGCACGCAACTATGCTCTGTCACGCCCGCTCACCGCAGCAGCCGATCCCCCAGGCTGCACATCCGGGCGGCCAGGGGCCGCTGGCGTGGGCTCTGGGTCACCAGCGTCTGCGCGCGGCCTCGGTTGTGGCGGGTCTCGACACTTGGGGGGTCGAGACCCGCCAGGTTCGCCAGCACGAAGGAGTCGTCATGAATGTTCTGCACACCTCTGGTCGAAACTTGCACCGCGGCACACGGTCGAAGAACCCCGCCAAGCTCTCCCCCGCCCGCCACATCGTCCGCACCGCGCTCGGCGGCTTCCTGGCCTTCGCGGGCGTCAGCCATCTGACCTTCGCCCGTGACGAGTTCCAGGCGCAGGTGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //