Array 1 51139-52387 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXO01000018.1 Salmonella enterica subsp. enterica serovar Java strain BCW_2847 NODE_18_length_71500_cov_3.86228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51139 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 51200 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 51261 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 51322 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 51383 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 51444 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 51505 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 51566 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 51627 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 51688 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 51749 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 51810 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 51871 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 51932 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 51993 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 52055 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 52116 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 52177 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 52238 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 52299 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 52360 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67666-69160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXO01000018.1 Salmonella enterica subsp. enterica serovar Java strain BCW_2847 NODE_18_length_71500_cov_3.86228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67666 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 67727 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 67788 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 67849 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 67910 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 67971 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 68032 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 68093 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 68154 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 68215 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 68276 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 68338 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 68399 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 68460 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 68521 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 68582 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 68643 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 68704 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 68765 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 68826 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 68887 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 68948 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 69009 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 69070 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 69131 29 96.6 0 ............T................ | A [69158] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //