Array 1 88386-89757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLV01000016.1 Salmonella enterica strain BCW_1852 NODE_16_length_96016_cov_2.88642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88386 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 88448 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 88509 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 88570 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 88631 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 88692 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 88753 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 88814 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 88875 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 88936 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 88997 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 89058 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 89119 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 89180 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 89242 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 89303 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 89364 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 89425 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 89486 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 89547 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 89608 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 89669 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 89730 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55159-57056 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLV01000006.1 Salmonella enterica strain BCW_1852 NODE_6_length_218627_cov_3.06171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 55159 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 55220 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 55281 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 55342 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 55404 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 55465 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 55526 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 55587 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 55648 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 55709 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 55770 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 55831 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 55892 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 55953 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 56014 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 56075 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 56136 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 56197 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 56258 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 56319 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 56377 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 56438 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 56499 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 56560 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 56621 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 56682 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 56743 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 56804 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 56905 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 56966 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57027 29 93.1 0 A...........T................ | A [57053] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //