Array 1 31207-34529 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819095.1 Brenneria sp. CFCC 11842 scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31207 29 100.0 32 ............................. TAAGAATCCCAAGATTGTTCTTTCCAAGAGAT 31268 29 100.0 32 ............................. TTAGTGGGATTCGTGAAGCTAGAAAGATATGC 31329 29 100.0 32 ............................. ATCTGACGCGGAACCAGCGCCCAATCATCAGG 31390 29 100.0 32 ............................. CCAATGAAATGCCGAACCTTCCGCTTGTGCTT 31451 29 100.0 32 ............................. AACAGATTAAATATTTTGACGGCTGCGTTTAT 31512 29 100.0 32 ............................. CGTTCGGGATGATGAAAGGGAACATCAAGTTA 31573 29 100.0 32 ............................. TCACCGATAAAAAATTGGAAATCCTGGAGGTA 31634 29 100.0 32 ............................. TGTTACCGTTAATGTCAATGGACACCACGCCG 31695 29 100.0 32 ............................. GTATCGTTGTATAACGTACTGGCCGGTTCGAC 31756 29 100.0 32 ............................. GTCGAGGATATCTTCCGGTTTAGTGAGGATTT 31817 29 100.0 32 ............................. CCGGTTTCGGTGCGGCCCCGTTGCCAACTGGC 31878 29 100.0 32 ............................. GTTGTGCGATAGACACCTCACTGTATTCGTTT 31939 29 100.0 32 ............................. GTCTCGGCATAGGCAATAAGGCTGTCACGGTC 32000 29 100.0 32 ............................. CAGTCGAAGAGCTGGAAGAAAAAATCGAAGAG 32061 29 100.0 32 ............................. TTTCCCAGCCACTGAAAGAAATGATCCAATCC 32122 29 100.0 32 ............................. CGTGGGGATGAGCGGTGAATCGCTGGGTACTG 32183 29 100.0 32 ............................. GAATTATTCACTAATCTAACGTGACCGTGGCT 32244 29 100.0 32 ............................. AGCTAATCGATTCCGGCCTGGATATATTCACC 32305 29 100.0 32 ............................. TTTTAACCCCATCAACGCCCCACAGTTCTTCC 32366 29 100.0 32 ............................. GATATTAATGCTAATCTTGTTCCAGTATTACG 32427 29 100.0 32 ............................. TTACAATCGACTCGTTCCAGGACAGTATCGAC 32488 29 100.0 32 ............................. TCCTGCCGGGGGTACGTCCGACGCGCCAGTTG 32549 29 100.0 32 ............................. CGTTGGGTGGATATTTGGATCTAGCCGGGAAC 32610 29 100.0 32 ............................. AAATTATCGGGCGTCGTCGCGGAAGATTTGCT 32671 29 100.0 32 ............................. CGCTTAGTTCAGATCGTTACTGACGGTGATTT 32732 29 100.0 32 ............................. CGTTCATATCAGCGGGATATGTATCACCACAC 32793 29 100.0 32 ............................. GACCATCAGCAGCAGCACAGGAGATTGTATTA 32854 29 100.0 32 ............................. CCGATTAAAGACGATGATGAACTGATTGCCGC 32915 29 100.0 32 ............................. TAAACGGTGTTAAGTTGTGGCGCAATGCTGAC 32976 29 100.0 32 ............................. CGTGACATGGCGCGAGTGCTGACCGATGGGAT 33037 29 100.0 32 ............................. GGTGCTATTTGAGTTTGAAAACGACCTAACAA 33098 29 100.0 32 ............................. AATGTCCCACCCATGCCCCATAGAGCCTCATC 33159 29 100.0 32 ............................. CTCCATCTAATTGCTCGGGCGACCGGATGTCG 33220 29 96.6 32 ............................A CAACGCTGCCCCACCAACAGATTACCGGAGAC 33281 29 100.0 32 ............................. CTTTTTCTCATTTACTGTATAAACGTACATAG 33342 29 100.0 32 ............................. AGCGAGGTTACTTTGCTTTTCAGCTTCACCTT 33403 29 100.0 32 ............................. AGGTTGAATTATCTTCAGAGGAGACTGAGGCG 33464 29 100.0 32 ............................. GCTGGGAAACAAACTGAGGCCGCAACCGCAGC 33525 29 100.0 32 ............................. CCAGCCCAGCCGTCCGTGATACTGATGCTAGT 33586 29 100.0 32 ............................. GTTGGTAACTCAGCTCCTAAAAACCAGGATCA 33647 29 100.0 32 ............................. GTAATATGAGTATTATTCAGGATTATATTGTT 33708 29 100.0 32 ............................. GCCAATAAATACGAGTGGCTAGGCGCTATCTT 33769 29 100.0 32 ............................. GTTCATAAAGCAATTGATGAGGCTAAAAAAGA 33830 29 100.0 32 ............................. TCTATCACAGTATATACCGATAATGTTCGCCT 33891 29 96.6 32 ............T................ ATACGGTGTTATTAATCACCCTAATTTTTATT 33952 29 100.0 32 ............................. GTATGTCTCCCAAATTTTCAACCTTAGTAAAA 34013 29 100.0 32 ............................. CGCACGCAATCAACGCGACCGCATAATAGGGC 34074 29 100.0 32 ............................. CCTATAAAATTCTAACTAAATCAGGTCTCATC 34135 29 100.0 32 ............................. GACAACTTACGCGCGCGGGTATTTGTTCGTGA 34196 29 100.0 32 ............................. TGTTCCGTATACCGACCAACGACCACTGTATA 34257 29 100.0 32 ............................. CAGTATATTCCCTGGCTCTCACAACAACATCA 34318 29 96.6 32 ............T................ GTCAGAATTCGCTCACTCAGTTGACAACGCGC 34379 29 100.0 32 ............................. CAGTAAACGAGAGCAGGATCAGGCTGTCGAAC 34440 29 89.7 32 ..A.........TC............... ATCGAATGGTGGCTCTGCCTGACTATGCCGCC 34501 29 69.0 0 .C.......ATATCT.T...........C | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGATTGAAGAAGTACTCTCCGCAGGCGGCATCACTCCGCCGTTGCCGCCGGACGACGCACAACCGCCGGCGATCCCAGAGCCAAAGCCGTTTGGCGATAGCGGCCATCGGGGAAATAGCTGAATGAGCATGCTGGTGGTAGTCACGGAAAATGTTCCGCCCCGCTTGCGCGGGCGTCTGGCGATTTGGCTGCTGGAGGTGCGGGCGGGCGTCTACGTCGGCGACACATCACAGCGGGTAAGGGAGATGATTTGGCAGCAGATTACCGAACTCACCGAGCAAGGCAATGTGGTGATGGCATGGGCGACCAACACTGAATCCGGCTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATGCCGGTGGATCTGGATGGGCTGCGGTTGGTGTCTTTCTCGCCCATTGATAATCAATAAGTTAGCGTTCTTTAATAATCAGGAAAAATCGGTGGATTTTTTCACTATGGAAAAGGATTTATAAAACAATACTCTACTTTTAGA # Right flank : CGATAATTTCCGCGTTATCGAAAACAACGCCATCACGACGATGGAGATTTAGCAAAGACACCCTTAGACGTAATAAACTACTCCCCACCTTTAGGCGCGGTTTCCGGCGGAAAGCTTGATCCGCCGCATGCAGGAGTTATTCCGGCCAGCGGCGTTATTGTGGTCCGCGTATAATTCCGCATCCTTCCTACGGTAAGGCGATTATTGCGGCCTACGATATGATCCGCTTTTCGATCAATATCATACGCGGTTGTTATGGCGGCTGGTCGGTATTATTTCCATTACTGGGGGGAAAGCCATATTGTGCTCGATAATCTGCCCGAAGTAGCCGTGCCGACATCTTCTACGCGATTGGCAAACCCCGCGGCCAGCGTGCGCTGCTCCCTGTCAATTGGCTACGTACGGTAGATCTGCGTCCCTAAAAGAGCGCTTATTTTGTCTTCGCAGGATGACAAAAGGTCGTTGTTTACGCGTCGTTCTATCAGTATTCGCGGCTCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 289568-288937 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819076.1 Brenneria sp. CFCC 11842 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 289567 27 82.1 90 ..GGG......T..-............. ACGTACGTGATCGACCGCTTGCCTGGCTATCTTGTTCACTGCCTGTACGGCAGTGAACTATTTTCCTCAAATACTTCTCTATATTGCGTA T [289558] 289449 28 85.7 32 T......A...T..........T..... AGCCGTGAAACACATTCCACCAGCCCCAGCCA GA,T [289442,289445] 289386 28 92.9 32 ...........T..........T..... TAACTGCATACCGGAAACATAGTTGTTGCTGC 289326 28 96.4 32 ...........T................ CTCATCACTATCGACGATGCGCCGCATTGTTA 289266 28 100.0 32 ............................ GAAAACACTCTCGGCGGATTAACTGGCACAAT 289206 28 100.0 32 ............................ AAGACCGAAACGCCGATGCCGGGCGCGACTAC 289146 28 92.9 91 ........T.............T..... ATCAGCAGCAAACCCAGTCCCTCGGCCAGACTGTTCACTGCCTGTACAGCAGTGAACGGTGGTGAAATTGGGATCGGTGATATTACACATT 289027 28 89.3 32 T..........T..........T..... AGTGTATGCTGCTGGCGCTAGTGTGTCAGATG G,GT [289020,289022] 288964 28 71.4 0 .........A.TG.......A.A.C.CT | ========== ====== ====== ====== ============================ =========================================================================================== ================== 9 28 90.1 47 GTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GAACCAATGACAATCAGGTCGGCGTTGACTTCCTCCGCCTCTTTCAGAATTTCATCATAAATCGACCCCATACGAACGCTGATTGAAAGCCGCTCCTCCGGCAGCGCCAGCTTATCGGCGATAGCTTTCAGCTGTTGCTTGATATCCGTTGCCAGAGTGTCTTCAAACTGATGCGTTTGCGGATTAAACCGGTTCAGAATATAGTCCGGCACCGTGGATATCACATACAGCAGCCGCAGGCTGGCCGACGTTTTTTCCACCAGGAACCTGGCCTGCTGCAACGATTTTTCCGTTAACTCCGGCTCACTGACATCCACCGGCAATAAAACTGACTGGTACATCCTGCCCTCCTGACGAAAATTAATGCCAATAGCGCAACTTTACTCCCGATAGAAGGCAATAGACAAAAAAACCGCTCCCGGCGGGGCAGTAATCTCGCGCATTGATTCGCGCAAGGAAACCGCTATCGCCAGAGAAGCCCGGCAACTGCGCTGAATTTT # Right flank : AAGGCAAAGTATCGCCTTTGCAGTGAAACTTTGTCTGTTTTTAATAGCGTGATTTGGCTGAAAATAGTGAAGCCATCCTCATGCGGAGAATGGCTTCGGCCAGGGTTAGAACGAGGTCCAGTCCTGTGAACTATCCGCTGGTTTGTTCGCTGTCGGCGCTAACTTGCCGGCCGCTGGCAACGCGGAGGATTGCGAGAAGCTGCTCGCATCGGTGGGACGCGTTAATGCCCCCGCGTCATCCAGCTTAAACGTACGCACCGACTCGGCCAGTATCGACGCCTGAGACTGCAACGAAAGCGCCGCTGAAGCGGATTCTTCCACCAGGGCCGCGTTCTGCTGGGTGGTGCTGTCGATCTGCCCTACCGCAATATTAATCTGGTTGATGCCGTCGCTTTGCTCATGGCTGGCCTGGGCGATTTCGCTGATGATATCGTTTACGTCCTGAACGTTGGTCGTCAGGCCGCTGATATTTTCTTCGGCATTATCCACCAACTGCATCC # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-1.21, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [16-16] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //