Array 1 1669-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFS01000104.1 Escherichia coli strain OU-NP047 sequence104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1668 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1607 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1546 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1485 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1424 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1363 29 100.0 32 ............................. TGCCACCAGGCCAGCGACACATCAGACAACTG 1302 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1241 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1180 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1119 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1058 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 997 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 936 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 875 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 814 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 753 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 692 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 631 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 570 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 509 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 448 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 387 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 326 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 265 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 204 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 143 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15030-15608 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFS01000019.1 Escherichia coli strain OU-NP047 sequence019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15030 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 15091 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 15152 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 15213 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 15274 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 15335 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 15396 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 15458 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 15519 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 15580 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //