Array 1 229321-230142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZL01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST4329 ST4329_00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229321 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 229382 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 229443 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 229504 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 229565 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 229627 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 229688 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 229749 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 229810 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 229871 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 229932 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 229993 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 230054 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 230115 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 246275-248056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZL01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST4329 ST4329_00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 246275 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 246336 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 246397 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 246458 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 246519 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 246580 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 246642 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 246703 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 246764 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 246825 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 246886 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 246947 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 247008 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 247069 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 247130 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 247191 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 247252 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 247313 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 247375 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 247478 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 247539 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 247600 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 247661 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 247722 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 247783 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 247844 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 247905 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 247966 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 248027 29 96.6 0 A............................ | A [248053] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //