Array 1 121053-121618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNMS010000005.1 Providencia huaxiensis strain 2021EL-01262 NODE_5_length_187356_cov_50.902665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121053 28 100.0 32 ............................ GGGGCGATTGTTGTATTCGATAAAACATGGAA 121113 28 100.0 32 ............................ TAGATCTCGACGTTCCGTTGCTAACACGGTTA 121173 28 100.0 32 ............................ TCAAAAAATTATTTAGTCGGATCTTTGCTTCT 121233 28 100.0 32 ............................ ACTCTTCGCTTCCTTGCTCTACTTTGGTTAAA 121293 28 100.0 32 ............................ TCAGCGACGAGTTTAATGATGTTGAAGAGATA 121353 28 100.0 32 ............................ TGAAGAAATAATGAAGAATGGGAAACCGCACG 121413 28 100.0 32 ............................ CCTGAAAAAAGTGAGTTATTAACCGACTGGTT 121473 28 100.0 32 ............................ GTTTTTCTCATACAGCTTGTTATTGAATGTGG 121533 28 96.4 30 ...........T................ CTAAACCCGCCTTGTTTTGACTCCGCCACA 121591 28 71.4 0 ...T...A.....T.AA.C..A..A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAATATTGAAGCTAAGCAAGGCTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCAATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTTAAAGACTTAAATAGCATGTCACTTTTCGGTAGCCGTTAATTATTTAATATTATTTTTACTCACCGCGCTGTGGAGCGATCCAAGCGCGGTTTTTTTGTTTGGTTTTTTTAGTCACTACTTCAAAGTTTGAGTTCACTATTTGTGTTTTTCATATTGCATAAATTTGCGTTTGTTTTACCCTAATTTGACCTTTGATTTTTGCTCTTTAAAAATTCATTCACTAAACAATAAGTTACAACCAGTACTGAAAATAAAGCTATTTTTCATTTTTTAAAGTTAGCACGTTGTTTTTATTTGTTTTAATCTACAAAAGTTATA # Right flank : AAGTTATCAAAGAGGTATTTTTTACTCACTATTTTGTGAAACTCTTCGCAAATTGGACTTTAGTCATGGGTTAAGACTTGTTTCGTAAGTTAAAGCTTATTCTAATAGGATTAATTGATTCAAAAATCTTATTATTTAAGGACGAAATTTAGCGTTTATGGATGATTTCTCGCCGAGTGACTTAAAAACTATTTTGCATTCAAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTGATGCAAAAAGACGGTCGAGTGCTCTATTTTACCGAAGCCAAAAACGAAAACCTCTATTTCAATATCCCGATTGCGAATACTACAGTTTTATTACTGGGAACAGGAACCTCCATCACTCAGGCGGCGATGCGAATGCTATCCCAAGCAGGGGTACTCGTTGGCTTCTGTGGTGGTGGGGGAACGCCACTGTATATGTCCACCGAAGTTGAATGGCTAACGCCACAAGGGGAGTATCGGCCAACGGAATATCTACAAGGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 130238-130913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNMS010000005.1 Providencia huaxiensis strain 2021EL-01262 NODE_5_length_187356_cov_50.902665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 130238 28 100.0 32 ............................ TCATAGCCTCTTGTACTGACAATCCACACTTT 130298 28 100.0 33 ............................ CTGCAACTTTAAGCGCTGTTTTTTTAGTTTTGT 130359 28 100.0 32 ............................ AGCAGAACAACGGGAAGCCATCGCCCGTACAT 130419 28 100.0 32 ............................ CTTCAGAAATCGAACCAATGACCAAAGATGAT 130479 28 100.0 32 ............................ AGCTATAACTGACTTCCTCGAAGGCTCATATC 130539 28 100.0 32 ............................ ATCGGAAAAAGCGTGGTGTAATGCATTGGCTG 130599 28 96.4 32 ...........C................ ATAATCCAAGCAGCAGCATCTTCTTGCGAAAT 130659 28 92.9 199 ...........C......A......... TTATAAGAAAATACCCATTATTTATTATTGTCTACGCTATTTTAAGATAAACTTTATTTACTTTTAATTAGTCATCCCATATTAACTTTTAATCTTTACGTTAAAAACAATTCATCTTAGATTTCTCTCCGTACCGCATTAATTAATTAGATAGATAACTGTCAATTGACAGCTTAGAAACGAAACAAGTAATGGGTAT 130886 28 71.4 0 .A.T.......CG..........TTT.T | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 9 28 95.6 53 GTTCACCGCCATACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAAACCGTACCTGAACAGCATGTCCAAGTAAGCTATATTCGAAAGCATGTAAAAGGTCAGAGTCGAATTGAAGCCGATATGCAGCAAAAAGCGCGATTATGGTCTGAAAAATCAGGACAACCATTAGAACAGTGCTTAAAGACGTTGTCTGCGAGTAAGCCAAAGGCGGCTAATCGCTTGCCATTTATTTGGGTTGAAAGCTTACATGCCAGAGATAAGCAAGCTGAAAGCCGGTCTTTTCCTTTGTTTATTAAAAGGATAGACGCTACACAAAAGCAAGTTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAACAACTAATGACTCAGTTTGTTTAGCAACGGTTCCACATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTGGTTAATAAATCAGTAAGTTATAATTATCAGTAAATAAAAGGGTATTTCTCGATAAATACCCTTAACTAATTGTTATTACTTATTTTTTGTTTTAAAGTGCATA # Right flank : TGATAATGCCTGAAACAAGTATTGGGTTTTATATGTCGATTTAATAAAAGGAAAAGTCAATGAGTTTTGAATTCGAAATAAGTTTTTATATATTTACTTTAAGAATCAGAATGACCAAATGGTTTTACTAATTAATTGATTAAGTATCGATACTCAAACAAACAAATTAAACATCAACGATAACTGCTCGAAAGCTTGGTGGATAAGCCGCTCGGTGTAGCGGGGGAGGATAGAGATAATCACTCCTAACATACTGATACCGATAGTTAAGGTGAGGGGGAACCCCACGACAAACACCGACAACTGCGGGGTCATGCGGTTTAGGATACCCAGAGCAAGGTTTAGAATTAAAAATAAGGTGATAAACGGCAAAGCTAACATTAACCCATTAATAAATATAGTGTTAGCAAATTGAGCAAATACCCAAAAACCATCGCGATTTAATGGTGCGGTTTGAATTGGGAGCAGTTCAAATGAATTGACCACGATATAAATAAGCC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-2.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCATACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //