Array 1 339859-344001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDI010000001.1 Bifidobacterium longum strain D31t1_170403_B2 NODE_1_length_528939_cov_65.7986, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 339859 36 100.0 37 .................................... TTCAGCTACGGTATAGCGAGCCATGCTCAATGCATCG 339932 36 100.0 36 .................................... GATAACATGGGGCTACAGGCATTCGTATATGACGCG 340004 36 100.0 37 .................................... TTCGTCCAGCGTGTCGAATACGTCAACGCCCATTGCA 340077 36 100.0 35 .................................... ATGTTCGTCGTGAGCTTGACGATCTCGCCGTCCAG 340148 36 100.0 35 .................................... GATGAAATGCACGTCTTATATGGGGAGGGTACCAC 340219 36 100.0 35 .................................... GCCTGAGATGCACGCTGGAAAACACTCAACGGGTT 340290 36 100.0 36 .................................... ATCACATTGTTTCTGTTTCGCCAAACAGCTCACTAA 340362 36 100.0 36 .................................... TTGACTGGATATGTGATGTCTGCGGATAAAGTAATC 340434 36 100.0 36 .................................... CAAAACCCAAGAGAACAAAACCCAAGAACAATCCCC 340506 36 100.0 35 .................................... ACGAGCCGCGAGGACCTCAGGGCCACCGTCGCCAA 340577 36 100.0 37 .................................... CTTCGTCAGATCGCTCGACTGGTCCGGGCGAGGATTC 340650 36 100.0 35 .................................... CAGTGGACGACCACGCGGGCCGCCAAATCACCCTT 340721 36 100.0 35 .................................... GGGCCTTCAACTTGTCGACCTCCTCCTGACGGGAC 340792 36 100.0 36 .................................... GCAGTTCGAGTTTCCGGCACGTGACAGGCAGTGTGA 340864 36 100.0 37 .................................... TCGAGCAGGTAGGGGCTGAGCTTGTCTCGGTGGTCTC 340937 36 100.0 37 .................................... CTATGGGGCGCTACTGGTGTCGGAAAAACCCGACATG 341010 36 100.0 36 .................................... CGGACATACAGGGGTTCAGGCGTCACCCAAGCCGCG 341082 36 100.0 35 .................................... ATTCAGGGCGTTGCCGCATTCGTCCGCGAAGTCGA 341153 36 100.0 37 .................................... GGAGTCCCGACCGTATGGTTGCAATTGGACTGAGATG 341226 36 100.0 36 .................................... TCCTCCATTCGGTCCATCTCGTCTTGCAGCAGTCTT 341298 36 100.0 38 .................................... GTTGATGATCTTCTGGTTCGCTCCGTCGCGCCCGCCAA 341372 36 100.0 36 .................................... ATGCTGGAAGGTAACGGCGTAGGGCATGGCAGAATC 341444 36 100.0 36 .................................... TGGGTGCCCTTGCGCCAACACTGTCTTTCGCGCAGC 341516 36 100.0 36 .................................... GACTACAGCAACGCAGAGACCGCCGAACTGAACACC 341588 36 100.0 35 .................................... GTTGGGAAAACCCACACGTTCGTCCCCGTTGGATA 341659 36 100.0 34 .................................... GCACAAAAAGCTGCCCCCTGCTCAGTGGCGGGAT 341729 36 100.0 37 .................................... CCGGACGTACTGGTGTTCTTCAATGAGACGGCGAGCG 341802 36 100.0 36 .................................... AAGCCCCACGGACGTGCCCCGCCATACTCAGGAGAA 341874 36 100.0 40 .................................... CCGCTCCGGCGGCCAGAGTGTTCGTGGCCCATGAATGGCG 341950 36 100.0 37 .................................... TCTGTCGAGTCGCATTCCGCCGATGACGCTGCGGACG 342023 36 100.0 38 .................................... GCCACAACATAGGGACAACCATAATGCGCGCGTTCGGG 342097 36 100.0 36 .................................... TCGGGAGAACCGTCATACACGGCCCAACTCGGCATA 342169 36 100.0 35 .................................... TCGACCTTGGTCTGGGAATTGGGCACTTCGACGTA 342240 36 100.0 35 .................................... TCGTCGGCGGTGGTCCAGATGCCCATCAGCGAGAA 342311 36 100.0 35 .................................... GAACGCGACTATCCCGCGACTCATTCCGAGGCCGG 342382 36 100.0 36 .................................... AACATTGGGCACCGACCCGGGTGTTCTGGTTACGGA 342454 36 100.0 36 .................................... ATAATAGTAGGGCCATACACCTTATTAGTGCATGAC 342526 36 100.0 37 .................................... CCGTTACAGGGCGTATGGGGTGGCGTGAACAGGAGTA 342599 36 100.0 37 .................................... AAGCCACATCAGCCGAGAACAATGCGTATCCTTCTTC 342672 36 100.0 38 .................................... CCGCCAGCAGCGTGCACTGTTACGAGGCTTCTACGGTC 342746 36 97.2 37 ................T................... GCGTTCCAACGGTCCATGCTGCCGTTGCCGTGCGGCG 342819 36 100.0 35 .................................... ATGTTGTCGAATCCACGTTTCTTTCTCTTGCGGTT 342890 36 100.0 37 .................................... GTTACCGGAATTGTCAAGGCGATACTTGGGCAACGCA 342963 36 100.0 36 .................................... AACCAGTTCATCGACATCCTCGTAAATCGTATCGGC 343035 36 100.0 35 .................................... TACGGTCACCAGTACCAAGTCACAGGGTATGAGTG 343106 36 100.0 37 .................................... GTGGCTAGCGCTAACGGTAAGTGTGTTGTCGCGTATC 343179 36 100.0 35 .................................... TCATCGACCACGTAGTCAAGTCAAAGGACAACCGG 343250 36 100.0 36 .................................... TAAGCGACCAGGACGCGAGGACCGCTAGCGAACGGT 343322 36 100.0 35 .................................... AACAGTTGCACCATGCAACAATATCCAAACTTGAG 343393 36 100.0 37 .................................... TCGGTAATCCAGCAGCCGGATATGCCGACGAATCGGC 343466 36 100.0 35 .................................... GCGAGTGCGATGTGCATGTTCCCGTCGTTGTCGAG 343537 36 100.0 36 .................................... GGCGCGCGTCTGCACATGATTGTCGTCCCGCCCGGC 343609 36 100.0 35 .................................... CGCAACATCGGTCATACTTGGTTCTGTGTCCATCA 343680 36 100.0 37 .................................... CTCAATATCTGGACTCAGATATACGGCGCGCTGGGTA 343753 36 100.0 35 .................................... GACATGCCGTTGTATCGCATCCCGTTGGACGGTAT 343824 36 100.0 35 .................................... CATGAGATAGGCGTATTGCGATACAAAAAAGCCAA 343895 36 100.0 35 .................................... TTGGTGGGGGCTAGCTCGTCGTGGCATATGCTGAC 343966 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 58 36 99.9 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : GAAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGTGCGGATGTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : GAGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCAAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAACAGGTAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTATCTGCCCTAATTAGAGTACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTATTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //