Array 1 182600-184275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJSC01000002.1 Escherichia coli strain MOD1-EC3801 MOD1-EC3801_2_length_299085_cov_34.2378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182600 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 182661 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 182722 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 182783 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 182844 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 182905 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 182966 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 183027 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 183088 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 183149 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 183210 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 183271 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 183332 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 183393 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 183454 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 183515 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 183576 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 183637 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 183698 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 183759 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 183820 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 183881 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 183942 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 184003 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 184064 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 184125 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 184186 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 184247 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199777-200477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJSC01000002.1 Escherichia coli strain MOD1-EC3801 MOD1-EC3801_2_length_299085_cov_34.2378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199777 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 199838 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 199899 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 199960 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 200021 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 200082 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 200143 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 200204 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 200265 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 200327 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 200388 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 200449 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //