Array 1 42026-40960 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHH01000004.1 Aerococcus urinae strain UMB3440 NODE_4_length_137346_cov_64.2281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42025 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 41964 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 41903 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 41842 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 41781 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 41720 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 41659 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 41598 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 41537 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 41476 29 100.0 32 ............................. TCATCAAAAACTCTCTCTGACTTTTAAATTTT 41415 29 100.0 32 ............................. TTTGTTAACCTCAACAAAATTGGGCTTAGGCA 41354 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 41293 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 41232 29 96.6 32 ............................C TACCCTCACTAAGGATAGCCCACAAGCCTACA 41171 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 41110 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 41049 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 40988 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : ATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAATGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60895-60562 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHH01000004.1 Aerococcus urinae strain UMB3440 NODE_4_length_137346_cov_64.2281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60894 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 60833 28 100.0 33 ............................ TATATGGTGACGATGTATTAGTTTTCAGTAAAG 60772 28 100.0 33 ............................ CTATGAAACATGGAACGTTATGATGTGGATTTA 60711 28 100.0 33 ............................ TGAATTACCTATTAACTCTTGAAAACCAATACG 60650 28 100.0 33 ............................ GGACCGCTAAGATCCCCATTTTGCAATACCTTA 60589 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : TCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //