Array 1 103564-102301 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023442.1 Nostoc sp. MS1 plasmid pNSMS101, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 103563 34 85.7 36 ...T....G.A.A-..................... ATAAGCAGCCTCTAGCGTATTTTTTCTTTCTGCTTA T [103560] 103492 35 100.0 40 ................................... ATTAATCTTTTTACATCCTGGTGGGTGAACATTGTTTAAA 103417 35 100.0 40 ................................... ATTAATCTTTTTACATCCTGGTGGGTGAACATTGTTTAAA 103342 35 97.1 37 .....G............................. ATTCTGATTGGACATTAAAAGTAGATGGGGATTTAGA 103270 35 97.1 37 .....................T............. CTTCCTAATCAATTTCAACAAGCAATCGGATTGCCCA 103198 35 100.0 37 ................................... ATTTATGTCGCCCTAATAATTGCATTAGCGACTCAAC 103126 35 97.1 35 ..................T................ CCTGATCTGATTAATAGCGATCGCCAAACTTTGAC 103056 35 88.6 37 ........T..........ACT............. CGACCAACTGAGTTAATGCGTGGCGCAAGCTTAAAAC 102984 35 88.6 37 ...T...............ACT............. GCAGGTCAAGCTAAGGATGTGATGGGTCAGACCATGC 102912 35 94.3 37 ....................CT............. GAGATTCAAGAGGTAGGTTACGATAGTATCGTGATGC 102840 35 94.3 39 .....T...............C............. ATGCCCGGAGGGTTTGTCTACAACCAATTCCGCTTCTTC 102766 35 94.3 38 .....C...............T............. AAGGGATAGCGGAGATTGCAAGAAGATTCTTTCAAGAC 102693 35 97.1 37 .....................C............. TTTCCTGGTCAAGTCGGACGTAATAAATATATGAGCC 102621 35 94.3 39 ...G.................C............. GGCATGGCGACTACTGTTTTCGCTGGCGGTGCGCTGATC 102547 35 94.3 36 ...G.................C............. AACAAGGCAGATTTCGACGCTTACGGCGCTGCTCTC 102476 35 94.3 36 .....C...............T............. ACATATACCCAAGAAAAAAAGGCGGTTGCCACCACC 102405 35 94.3 35 ...........G.........T............. TACGAACCCGGTCGAAACGAGGAAAAAGGTTACAT 102335 35 94.3 0 ...........G.........T............. | ========== ====== ====== ====== =================================== ======================================== ================== 18 35 94.8 37 TGACCAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : AGATTTTAACTCATGATATGGTTCAAAAATGAGTATCCAGTTTATAGTTCACTTTTAGTATTCGAGTTTTTTAGTAATAATGATTATTGTGTTGGGGATAAAAAGACTGATACAAGAGACGTTTGTATCAATCCTTCGGCTTGATTATCATTATTATTCAGCTACGAGTTGAGGTTAGCGATCGCCCAACAACAGAGCGATCGCTAAGACCAGGAAATATTTGATTTTTACTCAGATATCTACTAAAACAAAATTTTTGAACCATAACATGGGTATTTGAACCATATTTTGAATTGAAAGTTTAAGTTAGACCAATTTTGTCAAGGATTTTTTGTGCAAGTTTTGTCCAATTGTGTTTTTTCAACTCATTCTTTAGTTATGCTTCAAAATTTCAACTCTATCTCATGATTTGATTCAAAGTTTGATGTTGTGATTGGTCAAAAAGCCTGAAATTGCGTTAACTCTTTTCTAATTTATGGTTCAAAATTTTTCTCATATTT # Right flank : TTCCTATTATGAGTAATTACAGCACGGGCCGCCTCTTCCAAGTTATCTCTGTCCCGTAACCTATGGATGCGATCGCAGAGCAATAATATCTGCTGACCTCCGCATCCGAAATTTATTTTTCAGCTATACCACTAGCAATCAATGCTTCTCTATATAACCAAGCTTCTCTAGCTGTTGTAAACCCATCACTCCACTTATTTTCATTACTATGTTTGAGCCGATATCCTACACCCCAACTATCGGTTTCAAATGAATAATAGATTTTATAGAGCATCACTGGTTGAGCAAAGTCACTTCCGCAATCACGATCATGCTCTACGAAAGTACCGTCTTGCTTAATCCCGTAAAAACGTCGTTTTCTTTGTTTAGGTGAACTTCTACAATCTCACCTAAATGTTTAGACTGTAAAATAATAGTTCCATCTTGTTCAACGCGATGGAACTTGGGATTGTGCGTAGCCATACAGTTTTATTTGTAATATTCGGAACATCATACACTAC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACCAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 105608-104141 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023442.1 Nostoc sp. MS1 plasmid pNSMS101, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 105607 36 100.0 36 .................................... ATTTTGCTGATGTTGATTCACCTGATTTAAAAAGAA 105535 36 100.0 35 .................................... AGGTAAACCCGGAATTTTAATTGTTGAATACGTAT 105464 36 100.0 37 .................................... ATAGAGTAGGGATACAAACACACAGAGGGATCATAGT 105391 36 100.0 36 .................................... GTCAACAACTTGCCGCACTTTATGAAGTTAAGAAAA 105319 36 100.0 36 .................................... AACTCAGGTTGAACATCAAAACTTACAGTAGGGAAT 105247 36 100.0 35 .................................... TCTCCTAAAAGCCAACAGCAGACATAATGCCATCT 105176 36 100.0 35 .................................... GAGATGGCAGGATATAAGGTTGCTGTGCCTACCCC 105105 36 100.0 35 .................................... CTCTGTGAACCATCCACCTTTTTCTTACGTTTGCA 105034 36 100.0 34 .................................... ATAATCTTTCACGGATTGCAGCAGCATCTCTAGT 104964 36 100.0 34 .................................... TTATTTATTTGTAGATGAATTTAACTATTGTCGC 104894 36 100.0 35 .................................... GATACTAGAAGCTGGGATTATTTTAAAAAATTCAT 104823 36 100.0 35 .................................... AGTATTACTGGTTTCATGGCTGCACCACCCTGGAC 104752 36 100.0 36 .................................... TTGGGAAGTTTCACTATTTTTTGCTGGTCGCCTTCT 104680 36 100.0 36 .................................... AGAAAGTATTGTTTGAGGCTCCCCCCTTCTAATGAA 104608 36 100.0 37 .................................... CAACACTCTGCGCTAAATTAATTTATAGGATTCTTTG 104535 36 100.0 36 .................................... AGCCCATCGGAAGAATGGTGGGGCGCGGCGAAATGA 104463 36 100.0 35 .................................... GAATATCGCGGAAGATAAAGAGTATCGCTAATACC 104392 36 100.0 36 .................................... TCAGGGTATTGCGGACAATTTCCACTAAGTCCTGTG 104320 36 100.0 35 .................................... TGGTGCGGCATTTGGATTCACATCTTCCTGGAGTT 104249 36 100.0 37 .................................... CTCAGTTAAAACTTGCTAAATTAAACAGTCTGGGTAA 104176 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 21 36 100.0 36 ATGACCAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : CTTACAACTTACTCCAAGGATACGGCGAAAGGATGCAATACTCTATTTTTCGCTCTTGGTTAACTATGCGAACACGAGAGAAATTACGTTGGGAACTGGAGAAAATTTTAGCGCCAGAAGATAGTTTGTTATTAATTCGTCTGTCAAATCAATGCGTTAATTCTATTCCAGCTTACAATCGTCCTGGTGCTTGGTCAGATCAAGAACAAACTTACAAGATTGTCTAAAAATACATGGATCTCTGTTTGTGAAGCCTGTAATCGCAGCAAACAACTAGCAAAAGCTTACTGTGCTTTGATTTGGAGCTTTTTGGGTTTGTAGGAGGTGCTTGTATTTTCTTTCGTAAGGTCAAAAGCTAGTTCAGGTAAGCTTCTTAAGCTTAGGCGGAAACTGTGAAATTTCAATTTTGGTAAAAAATGAACCGCTTTGTTGCATTTTTCAGCCATATGCTTGCAAAATAGCAAATGGGCGGTGTCCTGATAACGGTTTCAGCCATCGCT # Right flank : ATTGATCTAACATTATTATTTTGTGCGTTCCCATCTATGACCAAACCTTTGATGCCTGTGATTTGAAACAAAAAATGAGATTTTAACTCATGATATGGTTCAAAAATGAGTATCCAGTTTATAGTTCACTTTTAGTATTCGAGTTTTTTAGTAATAATGATTATTGTGTTGGGGATAAAAAGACTGATACAAGAGACGTTTGTATCAATCCTTCGGCTTGATTATCATTATTATTCAGCTACGAGTTGAGGTTAGCGATCGCCCAACAACAGAGCGATCGCTAAGACCAGGAAATATTTGATTTTTACTCAGATATCTACTAAAACAAAATTTTTGAACCATAACATGGGTATTTGAACCATATTTTGAATTGAAAGTTTAAGTTAGACCAATTTTGTCAAGGATTTTTTGTGCAAGTTTTGTCCAATTGTGTTTTTTCAACTCATTCTTTAGTTATGCTTCAAAATTTCAACTCTATCTCATGATTTGATTCAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGACCAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 114453-115452 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023442.1 Nostoc sp. MS1 plasmid pNSMS101, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================================================================================================== ================== 114453 23 79.2 79 A..C..........TC...-.... TAGGTTCGGAGCAGATCGGGTTATCTTAGTCCCAACTGCTCTATAACACTGATAACTATCCAGCCTTAAGACCGTAAAA 114555 23 79.2 136 .............TAC...-...T TAGGTTAAGGTGAATATCCATATTATTACCATAAAAACTTTCTATAAGCTTGGTACAATCATCTGTCAGAGAAATAATTTATCTTCCTTAAGATTTAACTATTTTAAATATTATGAAGTGTGTAAGCTTACTGAAT 114714 23 91.7 48 .....T.............-.... AAGGTTTAGTCAGGGTTGTAGTACGGTTTCTGTAATAATCGCTGCTGG 114785 23 91.7 49 ..............C....-.... AAGGTTTGGTCAGTTCATGAGCGATCGCATCCAACGCATCCAGTTGATA 114857 23 91.7 49 ..............C....-.... AAGGTTTGGTCAGATCAGTATTCTGTAGTGTCGTTCTATCTAGACCCTA 114929 23 91.7 49 ..............C....-.... AAGGTTTGGTCAGCCCATAAAAAAATGCTCTATATTGCCTTGTAACAGG 115001 23 95.8 48 ...................-.... AAGGTTTGGTCAGGACTTGAAACCAGTTATGCGATCGCCATCTGCCCA 115072 23 95.8 48 ...................-.... AAGGTTTGGTCAGTTTATAGCGTGGCGCACCTCGTAACACCATGACTC 115143 23 91.7 49 ............C......-.... AAGGTTTGGTCATGTCTGAGAAAGGATAAAACTCAACGCCTTGCCCCTC 115215 24 100.0 48 ........................ GAGGTTAAACAGCCAAGTTTACCAAAAAGAACTTACCAGCCTAGATAT 115287 24 100.0 46 ........................ GAGGTTAAACAGGTTTACCTAGTGGCAACTCTCTAAAAAAACTGAT 115357 24 100.0 48 ........................ GAGGTTAAACAGACTTTGACGGTGAAGTAATTGTTGACGATTAGGAAT 115429 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================================================================================================================== ================== 13 24 93.0 58 GTGATCAACGCCTAGTGGCAATCA # Left flank : TAGACTTTCCTGCTAGTTGATAAATTAAGGAAATTTGAGGAATTTGTACGCGAACCCTAAAACAAGATTTCTCAGTCAGAAGTATCTTTCCTTGCTTATCTGGAAAACCAGGAATTGTCAAAATGCTCATGTATTTTTGCTGTCGTAGCTCTGGAATAAGGTGAATGCACGCAGCATAAAGCCCATAGTTATGATCCGCAGGAAGATACTTTCCTCTAACTGGAAAAGTTAGTTCAACAAAAGGCTCAAGCTCATTACCTGCATCTTGAGATGCAAAAAAATTCACAGATGCAACCATTTTAGGATGCTCCTAAATCATAAAAATATTCAATCTTTTCAAAACCTTGCGGCATCTAAGGTAGTAAACCGATAATACGTAATCTTTTGAGAAGTACTCTTGTTAAGTGGTAGTTTTTTCAGACTTGTTTAAGACCTTAAAACATCTGAATTAATTAATGAATAACAAAATTTTAATTTTATGTCAAGTAATTTACACTTTT # Right flank : AGAGGTTAAACAGAGCGGTTACTGAAATACATATTAGAACTGCCTTCAAACTCGATATTATAAGCATCTTGCTTCAAACAGCAATACATGAGCTACATTTGTATCTAAGTCTTAACTTTAAGAATAGCTATTGATTCTGAAATTCCTGTATTATATATGCTCCAGCCCTCCAAACAAAAATGCAAGCACCTTCAGACAACTTGAAACCTTTGAAAAGCATTTCTAGCAAAGATTTCATGGCATTTTTCCTTCTTTTTGAGCTTTCACATTGACAGATCCATGCAAAATAGAGTCTCGCTTGTTATGAACTAAGATTTTTACTTGTAATTCTAATTAGAAAACGCAAAGCTTCGTTAACTGCTTCTGAAGTCGGAAACATCTGATAAACATCAGGTTCTAGAACAACAGCCACTCTTTCAACTTTTGTATAATCATTACCTTGTTTACCATTCAATCTCTGATTTAGCTCTGGGCTATCTTCAGCTAAGGATGATTGCAAA # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.11, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAACGCCTAGTGGCAATCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 5659152-5661247 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023441.1 Nostoc sp. MS1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5659152 37 100.0 39 ..................................... ATAGATTTCATCAAGTTTATCCGCGCAGACAAGACAGGT 5659228 37 100.0 35 ..................................... TTCCTTAAGTGGCGACTTTCTTAAAGATGCTTTAG 5659300 37 100.0 34 ..................................... GCTACTAATCTTCTACCTGATCCTCTTTCTACAG 5659371 37 100.0 35 ..................................... CCAACGTAAACAGCTTGAAATTGATTTGTATAAAT 5659443 37 100.0 37 ..................................... GATATACTTTGAAGTTTCCAATCGGGTAGGAACATTT 5659517 37 100.0 37 ..................................... ATCTGGTGATGCCCCCAGTGGTGTTCCCGCCACTACG 5659591 37 100.0 33 ..................................... GTGGGATAGACGGTAATCCTTCATTGCTGAGGA 5659661 37 100.0 38 ..................................... ACCATCGACCAAGCCAGTAAACACGGTAGCAGGAAGTA 5659736 37 100.0 34 ..................................... ATCGTCTCATCTATTTCTTTGGCGATATTTAGGG 5659807 37 100.0 34 ..................................... TTTTTATATCTATTGACTATTACATTTTACTGTA 5659878 37 100.0 37 ..................................... CTTTAAGCTCGGATAAAGATTTCCAGCAGAGATTTAA 5659952 37 100.0 35 ..................................... CGAATCTCTATCTCTCCGCTTCCTTATTCAGTATA 5660024 37 100.0 37 ..................................... TGATGAGTGCGGCGTATTTCTTAATGCTCGGAGATGG 5660098 37 100.0 36 ..................................... ATTTCATCGTTGATCAGTTAGATGATGGTAGGTGGA 5660171 37 100.0 42 ..................................... CCACTGTCTGTAGTGTCTTTGATAGCTTGTATTACATCTAAG 5660250 37 100.0 35 ..................................... ATACATACTATGTACGTCTGCCATTTACCAAAGGA 5660322 37 100.0 36 ..................................... ATAATTTTCATAACAGCTTTAACCTTGGTTTGTAGC 5660395 37 100.0 35 ..................................... CTTCTGAAGAAATTGAGACAACGCAAACAACTATT 5660467 37 100.0 36 ..................................... GATGAGGCTGCGTGGTGGGCGGCTTATGGTACTACT 5660540 37 100.0 33 ..................................... CTGTTTTTAAGGCTTCAATGATTGCATAAACCT 5660610 37 100.0 35 ..................................... AGTGAAGTTCCCTCAGCAGCAGCACCAGCAGAAAC 5660682 37 100.0 34 ..................................... CCAACTTTTATCTACTCTACCTTTAGCTGGAATT 5660753 37 100.0 43 ..................................... GATTCGGTGGTTTTCTTCACTTTTATTCCTGTATGGATATGTG 5660833 37 100.0 43 ..................................... CTGCTGTATTAACTCTTTGCTGACTTATATGGAAATCAGCGCA 5660913 37 100.0 34 ..................................... CTTTTGGATTTAATCTAATTGTGGCGATTGCCAC 5660984 37 100.0 34 ..................................... AAAAGAGAGACAAGTCAAATCATAATAAACTGTA 5661055 37 100.0 36 ..................................... GGACTTGGATTGAATGGATTAGGAGCATAATAAGGA 5661128 37 100.0 46 ..................................... TCTGGAGTTCCGAGAAAGTCTATGATTGCGTTGACAGCAAAGCAAA 5661211 37 81.1 0 ........C.TAA...A......A...........G. | ========== ====== ====== ====== ===================================== ============================================== ================== 29 37 99.3 37 GTTAAAATTTCGGTTACTCCCTATTAGGGATTGAAAC # Left flank : CCAGTTGCCGGGAAAACGGGTACAACCTCCTCAGAAAAGGATATTTGGTTTGTTGGTACAGTACCGCAGTTAACAACTGCTATTTGGGTAGGAAGAGACGACAATCGCCAATTAGCTCACGGTGCTTCAGGCGGAGTTATGGTTGCGCCTGTCTGGCGAGATTTTATGCAGAAGGCACTTAAAGGTGTGCCAGTAGAAAGGTTCCAGCCACCAGCTAAATTTCCTCGTCCTCAATCCAAGTAGAAGTATTAAGGTTAAGCTGAAGTACCTTAAATGCGCGGATGGGTAGGTGTTTAAAATCAAATTTCGAGTGATAAGCTTTAAATTCTTTCAGGACAAGGGTTTTTCAAAAAACTGTTACTCAAGTATCCGCGTCCCTTACACAGACTAGGTTTTAGGCTTTTCTCCACTACTCAAATTGTATTCTTTATGGTATGATTAGCTCACCCGCGCAAAAGAACCTTGAAAACCAAATAAGTAAAGGCTTTTGGGCTTCCGCC # Right flank : CTGGATTCAGTACGTATATCCTAAGCGATCGCAGAATGTTAAAATTTTAGATGCCTGAGTGAAGTCTAGTTAAAAAGAAAAACTTAAGAACTAATTTCTAAATTGTAATGTTGACAGAGATTTTTCAGCTTTTCCAGCATAAGAGAACGCACATTCTCTGGTGCTAAAATTACACAATCTGGTGCATATTGCATTACTTCTCGAATAAACCAAAAGGTACTAGAGACACGCCTAACAACTCGCCTTACTTTTTGCGTTTGGGGAAGCCATTCATTTATTTTGTCTTCGGATTTGGGTTGATATGCAAAGGCTAAACCAGCAAACAGTTGCATTTCTACGTCTATTTCTGCTAACCCTAAGCGCCACTCACCAGTAACAGGTAAAATTACAGCGTCTTGTATTCTATCTAAACGTAAACTCCAATTGTGCTGTAATTCCTTGACATCTAAGTTACCCTCAGTCTCCTCACACCAGCAATCAAGGTATTGGCGTTTTTCATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTCGGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 5675823-5678399 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023441.1 Nostoc sp. MS1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================== ================== 5675823 37 100.0 33 ..................................... TTGAACGGTGTAATTGATGGCCAAGAGTTTTTC 5675893 37 100.0 35 ..................................... TGACAACTGACAAACTATTTTTTTACCAGATTCAC 5675965 37 100.0 36 ..................................... TTCATTTGATGATATCCGGTAGCGATATTCTCTCAA 5676038 37 100.0 36 ..................................... GGAGAGTAGTAAGCCGTGGCTGATGAGCCTTTGCCA 5676111 37 100.0 34 ..................................... AGTTTTTAATTATCAATAAAGCTGACCTTCCTTT 5676182 37 100.0 34 ..................................... ATCGAGTAAGAGTAAACGCTCATACTCAGCTTTC 5676253 37 100.0 35 ..................................... CATTTGTACTATATCTGCAATACCGAACACATCTA 5676325 37 100.0 35 ..................................... AGCGTGGTAATTAACGAAAAAACAACTGGTATTGA 5676397 37 100.0 36 ..................................... AGTCTGTGCTGAGAACCGTATGTGGGAGGAGTTTCA 5676470 37 100.0 35 ..................................... ACTCATGGTGTGCTAATTAATAACACCACATCATG 5676542 37 100.0 36 ..................................... ATGCTGCAACATCTCTACACAAGTTAGCATCATTGC 5676615 37 100.0 37 ..................................... GTCAAAATTATCAGAGGCGGCAACAACAATAGACGAG 5676689 37 100.0 35 ..................................... AAACGGAGGAAATCAAGTATATGGGTCTATTGAGT 5676761 37 100.0 36 ..................................... TTGGAGGTAGAGAACGCTGGGTCAACTGCTATTATT 5676834 37 100.0 38 ..................................... GTACACGCACAGGAAGACTAGCAACAAACAACCCCAAC 5676909 37 100.0 33 ..................................... ATATTCTATGTCATTCCAAGTGACATACGATAT 5676979 37 100.0 34 ..................................... ATGATGTGTGGTGAGTGTCATGCACTGAGTTAAC 5677050 37 100.0 37 ..................................... GAAATCATAGCACCAGTCTAGCACGCTGGTATAGTAA 5677124 37 100.0 33 ..................................... TTTGCTTTTTAACCCGCAAATTGTAATCACTGG 5677194 37 100.0 42 ..................................... TCGACAAGGAAGACTTCCTACTCCCTGCTACCGTGTTTACTG 5677273 37 100.0 37 ..................................... AACTTACTTTAGTGAGAGACTAGTTATAGGTCTAAGG 5677347 37 100.0 34 ..................................... ATAAACCAAATATTCTACAAGCTGTGAAACATCA 5677418 37 100.0 34 ..................................... AATGCCTGATAAGCTTGTAGACTTCTTTAAAAAC 5677489 37 100.0 36 ..................................... TGAAGTAGTTTCACCGGGGACTGAAAAGCAAAAGAA 5677562 37 100.0 35 ..................................... AAAGTGCGCGAGTACAACGGGGAAAAGTATTTTGA 5677634 37 100.0 34 ..................................... GCAAACAGCATTTGCCCAGACGATGGGGTAAGCC 5677705 37 100.0 35 ..................................... TATTTTTCTTATAGATAGTGCGGCATCAGGATTCG 5677777 37 100.0 35 ..................................... ACAGGGTGATCCCAATCCTAACTGGTTTATAACTA 5677849 37 100.0 34 ..................................... CTTTTTCTTGGATTTCGGTTGCGATCGCCTGCTT 5677920 37 100.0 35 ..................................... ATGCAGAGGGATTTCACATTATATCTTGTACTGGC 5677992 37 100.0 36 ..................................... CACTTGATTGGGGCATCGAAACGCAAAGAACACGCT 5678065 37 100.0 37 ..................................... CGTGACGATATTTATAAGAGAATTAGGCATCTTTTAA 5678139 37 94.6 187 ..............G.................A.... GACATCTCGCAGTATCACTTTGATGTGGTGTTTGGTTGAAATTTAATTGTATCTTCTGTTGAAATTTTGCGTTGCATATTTGCGGGATGATTTTACTATTTTTGTGGGATGGGCATCTTGCCCGTCCCTTGTATTTCAGGGCGCTCATGATGCCTACCCTACAAGAATCATCCCTTGATTCAGCAAC 5678363 37 73.0 0 .CCT.....C..C........AG.G......G....T | ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================== ================== 34 37 99.0 40 GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTGATTGTTTCCTATGATATTCCTGAAGATAAACGCCGTACCAAAATCCACAAAATACTCAAGTCTTACGGTCAATGGGTGCAGTATAGTGTGTTTGAATGTTCGCTCACTGATACTCAGTATGCAAAATTGCGATCGCGCTTGAATAAGTTAATTAAGCCTGAAAGCGATAGCATCCTCTTTTACTCCATGTGTGCCTGCTGTGTAGGTAAAATTGAACGTATTGGTGGAGAAAAAATCCGTGATGATAGCATTTTCTTTGCAGAATGCGCGGATGGGTAGGTGTTCCAAACCTAGTTTTGGAAAGACGGCTTCAAGTCTGCCCAGCGCAAGAGTTTCAGGGGAAATTGCTTCCAAAGTACCCGCGCTCCTTACACAGTCTGGGTTTTAGCAATTTGTTAGCTAATCAATCCATATTCTCCGTGCTATGATTTTCTCATCCGCGCAATAGAACCTTGAAAACTAAATATATATATAGTTTCGGGCTGTTGCC # Right flank : TTGCTAGTGATGACGTTAGCGTTAGAGCTTGTTTCTTTCCTCCTGGGTTAAATTTCTGCAATTCCCCCTTCAGATGACTTAGATGGCAAAAGCTGGCTCCATTTTTAGAGTAGGCAAAAAAATTGTGTACAGTTTTCCACCTATATTTTTTTGACTTGACTGGAAAAACGAACAGGGATTTATAATTATTTTTTAACAAAACACAAGCATGGCAGCATTGTTAGGACGAGACTTGTTAAGTCTGGCTGACTTAACTCCTACAGAACTTCACCAACTCCTGCAATTGGCAACCCAATTGAAATCTCAACAGTTGCAGTTGCGGTGTAATAAAGTGTTGGGTTTGTTATTTTCTAAAGCCTCAACTCGTACACGAGTCAGTTTCACGGTAGCTATGTACCAACTCGGTGGACAAGTAATTGATCTCAATCCCAACGTGACTCAAGTTAGTCGGGGAGAACCAATACAAGATACTGCACGAGTGTTAGATCGATATTTGGATA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //