Array 1 252116-250009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOE01000002.1 Salmonella enterica strain BCW_4915 NODE_2_length_696934_cov_4.0695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 252115 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 252054 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 251993 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 251932 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 251870 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 251809 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 251748 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 251687 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 251626 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 251565 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 251504 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 251443 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 251382 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 251321 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 251260 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 251199 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 251137 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 251076 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 251014 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 250953 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 250892 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 250831 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 250770 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 250709 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 250648 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 250587 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250526 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 250465 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 250404 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 250343 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 250282 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 250221 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 250160 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 250099 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 250038 29 89.7 0 A...........TC............... | A [250011] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269500-268374 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOE01000002.1 Salmonella enterica strain BCW_4915 NODE_2_length_696934_cov_4.0695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269499 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 269438 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 269377 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 269316 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 269255 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 269194 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 269133 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 269072 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 269011 29 100.0 31 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTG 268951 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG A [268950] 268889 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 268828 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 268767 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 268706 29 100.0 31 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTG 268646 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG C [268645] 268584 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 268523 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 268462 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 268401 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //