Array 1 24457-23702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHUR01000044.1 Clostridium homopropionicum DSM 5847 CLHOM_contig000062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 24456 30 100.0 35 .............................. ACACAATATGGTTTCAGCTCCTATAATGGTAGGAA 24391 30 100.0 36 .............................. CAACTAAGATTGCAAACACATATTCAAATTTTATTT 24325 30 100.0 35 .............................. AAGCTTAATACTGATAAAATAGCAGCTGAAGATGT 24260 30 100.0 37 .............................. GATATTGTTTTTGTAGTCCATGTTCCTCCGCGTTTTG 24193 30 100.0 35 .............................. TATGAGAAAGGGGCTTAAGCTCCTTTTTTTATAAT 24128 30 100.0 35 .............................. TTAAAGTGTTTATTCTCTCAGGACCTTCTGTATTA 24063 30 100.0 34 .............................. TCATTCTGAGGATCATCTTCATAGTCCTTATAAT 23999 30 93.3 37 .......TC..................... TCAAACATCTTGTAGCTGTCATAGATCTTACCCAATC 23932 30 93.3 36 .......T.T.................... AAAGAATGTGTTGATTTTGTTAAAAAATTTGAAGGA 23866 30 100.0 36 .............................. TATATTGTGATTCTTGTTCCATCTAACATATATACT TA [23855] 23798 30 90.0 37 ................G.......CA.... TACATATTAAGTCTCCTTTACAAGAATTGCTCTTTAG 23731 29 80.0 0 ...........T...C.-.....C.G...A | A [23711] ========== ====== ====== ====== ============================== ===================================== ================== 12 30 96.4 36 GCTGAACCTCAACATAAGATGTATTTAAAT # Left flank : TTGGCTGTACGCCAATTAATATTGTATTTTCTTGAAATTTCTGATATTGATAGTCCTTTTAAATAGTCATTTCGTATTTCCAACCATAGATCCTCCTTCATTTCTACAACACCACCTCTTGTTTTTTTATAGGTAGTGTTCCATAATTTAATTAAGATCTATGCACTTTTTAATCGTTGTTTTTATGTATTTTATCATTGTGTTCTACACTATAAAATGAAACATGCCATTTGTA # Right flank : TTATTGAGATGGACTTCAATAATTTATGTTAATTAACAACTAAATTGGTTTATAATATAAATAGAAGTTCCTAGGAAGGAGTTATATTTTATGCCTAAGAAAATACCTTATGGAATAAGTAATTATAAAAACTTAATAGAAAATGATTATATATATAGATAAAACTGAGTATATTGAAAAACTAGAAAATTACCATTCTCCTTATATATTTTTCCTTAGACCAAGACGATTTGGTAAGAGCCTTTTTACTTCTATTTTAGCAAATTATTATGACATAAAAGAGGAAGAAAACTTTAATAAGCTATTTGGAGAAACTTATATAGGCAAAAATCCAACTAAAGAAAAAAACAGTTACTATATATTAAAATTTAATTTTACTGGTCTTAATACAGATACAAAGGAAAAGTTAGAAGAGACATTTATTAGCACTATAAAAGAATCTTTTGATAAATTTATTAGTGATTACAAATTAAATATTAATTATATCCAAGAGGGAACAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACCTCAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 58766-54020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHUR01000028.1 Clostridium homopropionicum DSM 5847 CLHOM_contig000040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58765 30 100.0 34 .............................. AGCCTTTAGTTGATGATTTTCTTTATGAACTATT 58701 30 100.0 36 .............................. GATAATCATGGTAGAAAGAGGAAGTTTTCATACCTC 58635 30 100.0 35 .............................. TTAAATGATAATGATTTATACGATAGAAACTATGA 58570 30 100.0 35 .............................. GAGCACGTATTTGTCTATCAACAAGCCTGTCATTC 58505 30 100.0 35 .............................. CATTGATATATCTTTTTATCTTTATACTTATCCCA 58440 30 100.0 35 .............................. CAAGGTCGACCTTGTGTCGGTTGCTTGCTAATGCA 58375 30 100.0 34 .............................. TAAACTGCATACCTCAAACAGCAAAAGTTGAATT 58311 30 100.0 36 .............................. AATGATATATCAAACAGAGAGAGAAGCTATTGCAGA 58245 30 100.0 36 .............................. TGGTCTTTACGGCATTTGTTTTACTAATTATAGTGG 58179 30 100.0 37 .............................. TTCATGGGGCGTGTTACAAAGCCGCCCTTTCAAAATA 58112 30 100.0 36 .............................. TCTGTCTTTTAGCTGTTTTTCTCTAGCTTTAGCTAA 58046 30 100.0 36 .............................. TGCAATTCTTGCAATTAAAGATGGAAAGATAGGTTT 57980 30 100.0 36 .............................. CAGGTAGCTTAGGAATATGTGCAGAGGGCAATTATA 57914 30 100.0 35 .............................. CTCCATCCATATTTCTGTCGATTAAAACTTTTGTA 57849 30 100.0 34 .............................. ATATTTGGGAAAGAATGAGGGATAACTTGAATCA 57785 30 100.0 35 .............................. CCTTGTTTTCATCATTATTACAAGTTATGTAATTA 57720 30 100.0 35 .............................. GATAGGCTTGTTGATAGACAAATACGTGCCCTCTT 57655 30 100.0 34 .............................. TCTTTAATAATTCAGCAGGAGTACTAACAGATTT 57591 30 100.0 35 .............................. CTTTTTAGGAGGTAAAATATGGGTAAAATAAAATA 57526 30 100.0 37 .............................. ATATTTGAATTATTTTTTTCTAGGTCATATATTACTT 57459 30 100.0 35 .............................. GCTAAATATGATGATTATCCAAATGAATTTTATTA 57394 30 100.0 36 .............................. TGTTCTTGGTAAAGAGGGACAAACTTTATTAATTCT 57328 30 100.0 37 .............................. AAACCTCCACCCCCTTTTTTCTACTTCGCTATACCTT 57261 30 100.0 36 .............................. TAACTTCATTCATCCACTTCCTTTAATCAACTTTCA 57195 30 100.0 35 .............................. TAAGCACCTTCTGTATATTGTAATTACTAATTCGT 57130 30 100.0 36 .............................. TAAAGTAGGTTGTTGCAATTATCCTGATACAGAAGA 57064 30 100.0 35 .............................. TTTACTTAGAAGTCGATTAGATTGGCTTTATGGAA 56999 30 100.0 36 .............................. AGTTTCCTCTAAGAATAATATCTTAGAGGTACTTTA 56933 30 100.0 36 .............................. ATGCAAGAGATATTATTCATCACATAGCAGTCACTA 56867 30 100.0 37 .............................. CTAGGTTAATAGAAACTTTAAAGGAATGTAAAGCATC 56800 30 96.7 36 ..........................T... ACATAGACTAAATGAAATACAAATAAAGATAATAAT 56734 30 100.0 36 .............................. GACAAAGGATGGTGGAAGACCAGGCAAGGTTGACTT 56668 30 100.0 36 .............................. ATTTTTCTATCGATGGGAGTTGCAAATCAGCTGAAT 56602 30 100.0 36 .............................. TGGTTTTTTCGGTACTATTTTTTCATGGTTACCTAC 56536 30 100.0 34 .............................. ATAATGGAAATGAAGCTAAATTTTATAACCTTAT 56472 30 100.0 35 .............................. AAAATTTAAGACAGCACGAAGCAGTAAGGCAAACG 56407 30 100.0 35 .............................. GTTTTTAAATCCATAGTTAAAGGACTAAAATCTAA 56342 30 100.0 36 .............................. CAATCCTATCTGGCTCTCCTGACGATCCTGGACTTA 56276 30 100.0 34 .............................. GAGAAAAAAAGGAAGAAGCTAGATTTTTAAATAT 56212 30 100.0 36 .............................. TGGAGCTACTGCTGGCTCTTTATCTTGGGGTTTAGT 56146 30 100.0 35 .............................. TTTTCTGTAGTAAACAAATGGTTTATCCAATACAA 56081 30 100.0 36 .............................. TATTCCCAAATCTTAAGGAATATATAATGAACTCAA 56015 30 100.0 36 .............................. TTGCACATAATACTTTCTATATTGTCTTTTAGCCAT 55949 30 100.0 36 .............................. ATTCAATACTCATATAAGGAGAACGGAGAAGATAGA 55883 30 100.0 34 .............................. ATGTAGAAGTTTATATGAGAGAGGAGGGTAATTA 55819 30 100.0 35 .............................. GCCACTCTTCGCCTTGCTTATTTACCTCATTGTTT 55754 30 100.0 36 .............................. GCAGTAGTGAACTCTAAGTCTATAACTCCATTAGTC 55688 30 100.0 36 .............................. TCCTGCATTAAGCGTTCTTCTTCTAAATTTATAAGC 55622 30 100.0 34 .............................. CTGCTACTGTAGAGCAGCTTCTGGGGCAGGTCGC 55558 30 100.0 36 .............................. TGAAAATGTATATAAAATAGGAATGACTAGACGACT 55492 30 100.0 35 .............................. GAATTTTGAACCGATAAGGCAATTAAGACTAGATG 55427 30 100.0 36 .............................. ATTCCTCTTCAGCTTCTGCATATTCTTTTGCAAGAG 55361 30 100.0 35 .............................. GAAATTAAAGAAATTCTTAAAAAAGAAACTTTAAC 55296 30 100.0 36 .............................. AATTAGCACTACATCCGAGTCATCAAAGAAAAACTT 55230 30 100.0 35 .............................. TACTTATGCTAATCCTAATTTACTAAGATATAACA 55165 30 100.0 35 .............................. ATTGATCCAGTCAAGGATGATATAATGCCAACTTA 55100 30 100.0 37 .............................. TTTTTTCTTTACCTGTTTTATCTTTTACAGTAGTAAA 55033 30 100.0 34 .............................. TGTGAAGGGTTATTCTGGAGGCTTAGGAATCCAT 54969 30 100.0 34 .............................. GAGCTTCAGATCCATGAGAAAGATATACTTATAA 54905 30 100.0 35 .............................. GGGTATTTACCGAAGAATCATCATTATTCATTTGT 54840 30 100.0 35 .............................. ATGCTTAGAGCTAGGTTAGTTGATTACAATAGCTA 54775 30 100.0 35 .............................. ACTACTACTACAAAATTCAGTAATATTATCATTGC 54710 30 100.0 37 .............................. GCTTTTTTCCTTGACGTTTTTTAACATTTTTAATTAT 54643 30 100.0 37 .............................. TTTAGCAACATAACCACCACCAACAAGAGCAACACCC 54576 30 100.0 37 .............................. CTGTCGTCGAATCTTCACATCAAGGTCCTCAAATGAT 54509 30 100.0 36 .............................. TCGCTCCCCTAAAGGTGGGAGCGATATTTTTATCTA 54443 30 100.0 36 .............................. AATGTTATCACATTTATAAAAATATTTTCAAATTAA 54377 30 100.0 35 .............................. CGCTCCCCTAAAGGTGGGAGCGATATTTTTATCTA 54312 30 100.0 36 .............................. AAGATCATTAACAAATAAATACTCACCATTAATATT 54246 30 100.0 36 .............................. TGCAGCTGGTGGTAGCGGTGGAGGAGTTAACGATAC 54180 30 100.0 36 .............................. TAATGGTTTCTGTTTTGGAGTTGTTACTATATGGGA 54114 30 100.0 35 .............................. GTTGGTGCAGTTAAAAATATTCAAGCTGTTAGTCA 54049 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 73 30 100.0 36 ATTTAAATACATCTTATGTTGAGGTTCAGC # Left flank : TAGAAAAGAGTTCATGAATAATAAAAAGGATGTAATTAACACCCTTATACAATCAAAGTAAAATTTTTTACCTAATCTATGTACTTTTTGAATGGTACTTTTGTGTACTTTTAAATTATTGTTGACATATAGCCTACA # Right flank : CATTGAAAAAAAGCCATTTCTAGTTCATATTTTACTTTAAAAACCTAGCTTTAATCAATGCTTACATAAATTTTTACCAAGTGAATTTATATAAACTATTTTGTTTGAATGAATAATATCTAAACCCTTATGTTTCTTTATTTACATGATAATTTATAAATTATTTAACATGGTAAAATTATATTAGGTTTTGTTAATATCCATCATCATACTTTTATTGGATTTTATATTATTAAATCTTCTCCTGTATTATTTTGCTTATTTCCTAGTACTTCTTCTCCGTAGACATTATCATTCATAAGCTTTATAATACAAACAAAATCCTCATTTTCATTTATTACTTTTTTTAAGTCTTTTTTTAACAATATAATATTCGCTGGTGTTATCTCTCCCCTAAAAACAGACTTTTGAAAATGAGACAAATATTTTTTACACACCTTAAATACTTTATTAACTCTCTTTTCACCAACATCATAGAAAAGAAATGCGTAATTGTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTGAGGTTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //