Array 1 169696-167834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061725.1 Micromonospora craniellae strain LHW63014 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 169695 29 100.0 32 ............................. GAGGCAGAGCAATGGAACCGAAGACCGTAACT 169634 29 100.0 32 ............................. GGCTTGGCGCCATACCGAACCCGCACCACGTT 169573 29 96.6 32 ............................G GTAGATGGTCATTGGATGGGCTCCTTCGCGGG 169512 29 100.0 32 ............................. TCGACCGCCAACACCTCCCGCGCCCGAGGCGA 169451 29 100.0 32 ............................. ATCACCCCGATGCGTCGGCCCCGACTGCGGGC 169390 29 96.6 32 ............................G GGCGAGGTGTTCAAGCCGGGGGTGCTGCTGCG 169329 29 96.6 32 ............................A CGATGATCACGTACCTGCACGAGTGGGAGCTG 169268 29 100.0 32 ............................. TCGTGTCGATCACCGACCTGCTGGCAGCCCGC 169207 29 96.6 32 ............................G GCCGCACTGGACAAGGTACTCACCGACCCGAG 169146 29 96.6 32 ............................G CTGGGCCACGAGATCGACGGCGACGGCGCGTA 169085 29 96.6 32 ............................G GCGATGGTGGTCATGTGGACCGGCGGCAACTT 169024 29 100.0 32 ............................. TGGTCGGGCAGATGGTCCGCGACTCCCGACGC 168963 29 100.0 32 ............................. GGGCGGAGTTCGAGTTGGCCGACAGTGTTCCC 168902 29 100.0 32 ............................. GAGATGCGGACCATCGCCGCCGACCCCGAACT 168841 29 96.6 32 ............................G TCGTACGCGACGCCCCGATCTGCCATGTGCAG 168780 29 96.6 32 ............................G GCGGCGGCCCGATGAGTCCGCGCAAGGCCACC 168719 29 100.0 32 ............................. GCGGGCGACGACCGCAGCGTGGTGCTCAACGC 168658 29 100.0 32 ............................. TCGGCGCGCTGTCGGCCCCGGCTACTGGTGCG 168597 29 100.0 32 ............................. CGCCTGATCAGGGCGTGTGCGACGGCTGGTGT 168536 29 96.6 32 ............................T GCGACACCGCCTACGCCCCGTCGATCGAAGAG 168475 29 100.0 34 ............................. CGTCAGGACTGACGCTTCGCCTTCTTGCCAGCCG 168412 29 100.0 32 ............................. CAGTTTCCTCACGAGCTGTGGACGGAGCTGGC 168351 29 96.6 32 ............................T GTAGCCGCGCGACTCGTGGTGTGTCCAGAGGC 168290 29 96.6 32 ............................T CCGTGTGGCCGCCCGAGGTGGTGTAGTTGACG 168229 29 100.0 32 ............................. GCACTCGGGGGCTTGGCTGGCTCGCGGTATGC 168168 29 100.0 32 ............................. ACAACGGGCTCGCCTTCTTTGCCGAGCCCGAA 168107 29 96.6 32 ............................G TCCAGATAGACATTGTGGTCCGAGACGCCCAC 168046 29 100.0 32 ............................. ACGCAGGCCGTGGTCGGTCAGGACGGCTGCTA 167985 29 93.1 33 ..................A.........G CTGCCGGGCTACGTCCGCTATGAGGGCGTGCCC 167923 29 100.0 32 ............................. GTGGTCGGCTCCGCCGCCTCCCACTCCGCGAT 167862 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 31 29 98.5 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CAGTCGGATTCGGGACCGGTTGTGGGCGAAGGTCGTCGAGATGGCTGGGCCGGGCCGGGCGCTGCTCGTCTATGAACAGCCGGGTGAGCAGCGGCTGGGCTTCCATGTGCACGATCATCACTGGCAGCCCGTGGACCTCGACGGAATCGCCCTGATCCGCCGTCCCACCGATCGTGCGACGTACAACCCCGCCCTGCCCCGGGGCTGGAGCAAAGCCGCGAAACGTCGGCGCTTCGGACGCCGCAACTCGGGCGGCCCCGTGGGGACGGACCGAAGCCGTGGCGAGACGGATTCGTAAGCCCCGGTCGGCCAGCAACCAGCCCCATGGAAGCTGGAGCTGCGCCCACCAGCCGACGTCGGCGGTACGATCCAGACGCGTCGTGCCCGTGCTGCCCCGATACCGTGAACGGCCCAACTTCCGTACGAAGGAACTGGTGATCTTGAAACGCCGAGTGAATAAAAACAGCGCACTTGATCTTTAGGGCCGCAGGTCAAGAAGT # Right flank : GCCTGCCCTGTCTGCGGGTTCCGCAGCGGTGCCAGACGATCTCCACTATCACCGACAAGGTGATGGACGCCTTGTTGTTGACTGTGCCAGCGTCGCTCTGAAATCCGACCGTGCCGATGCTTGCACGGCGGTTGCAGAACAACTCGCTCAAGTCGTTCGTGCGTGGCGGTATACGTGGGTTCGGTGCCAGTCGAGGTAGGCGCGCTGGGGTGGCAGGGCGTCAGCGGGCAGGAGGAGGCGTTCGGCCAGGGGTGGCCGGCCGAACGCGGCGTGTAGGGCTGGGTCGGTGTCGATCTTGCGGTGCAGGTCGGTGTGGATGTGGATGCGTAGTCCGCCGTTGACGGTGAGCAGACCAGTGTCGAACGCGACGTCGTGTGTCGGGCAGGCAGTGAGGCCGTTGGCGACGTCGAGGCGTTCGCGCGGGCCGCTGTCCCGCCACGGCTTGATGTGAGAGGCGACGAGCATCCGCGGTGCCCGTCGGTCGTCGACGGTCACTGACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183971-184732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061725.1 Micromonospora craniellae strain LHW63014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183971 29 96.6 33 ............................T CTCCGCCATGGACTTTGCATTGTGCTTCGGGTC 184033 29 100.0 32 ............................. GGCTTCGGCTCCGGACGCGGCGGCGACGGTGC 184094 29 100.0 32 ............................. GCAGCCGCACGATGCTGTTGGCGCCGGAGGTG 184155 29 100.0 32 ............................. GACGCCCGACCGATCCTCGGCGACCTCGTCAC 184216 29 100.0 32 ............................. TGGGGACCAGACGAGCTGTGCCCCAAGGTCGT 184277 29 100.0 32 ............................. GTGCACCAACCCGACTACCACTGGGCGCCACC 184338 29 100.0 32 ............................. TTCACCAGCCGCAGCGCGTTCACGCTCGGCGG 184399 29 96.6 32 ............................T GAGCAGGTGACGACGGCGGCGGCGGCGAAACG 184460 29 96.6 32 ............................T CTGCGCTCCCGGCGGGGGCATTGTCGCTGTAG 184521 29 100.0 32 ............................. CGGGACGGGCACGGTTTCGCGATCGTGGTCGG 184582 29 96.6 32 ............................G GTCCGAGCCACCGTGGACGATGCCCCGTTCAT 184643 29 100.0 32 ............................. CCGCAGGCACGGCAGTGATCGGCGTCGTACCG 184704 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.0 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TGTCGCTGATCGCACTGCCTGCATGTCGCCGCTGGCCAGTTGTTCGCGGCCGTTGCGTCGTTTGGTCAGCAGCCCGGCTCTTTCCAGCACGGCGACGTGTTTCTGTACGGCGGCGAAGCTCATGTCGTACTTGATGGCGAGTGTCGAGATGGAGTGTTCTCCGGCCAGCACGCGGCGGAGGATGTCGCGTCGGGTGCGGTCGGCGAGTGCGTGGAACAGGGTGTCTGCCCGGTCCTCATTCGTCTCCGTCACCAGACGACCATACAACCATCCGGTTGTACGTTGCAAGTGTTTCCACCCGCCAGCGGCTTTCGGTCACCCCGGTGGGATCCGGGCTGCGCGGGCATGGCGAGACGTGTTCGGCCGTCGACGCGCGTTAGGCTGAAGGCCGCCTGCGAGATGCTCATCCGGCCTGTCCATCCGAACCGAAGGGCATGATCTTGAGAGTCGAAGTGAAGAGAAACGGCAAGGTTGATCTTTAGCGCCGCAGGTCAGGAAGT # Right flank : CGCGGCCAGCACGGGCGACACGCACTCGGCGAGCGCCAGCTGCTCCCCGTGTTCAGTCGGTACCGCACTCGTCTATCGGTTTGCCATGGTCAGAGCGCGCAGTTCATCCAAATACGAGACGACCTCACTCTTATCTGGACAGTGGCTGGCCAACGTATCCGCCAACTCACGCGAGCACATCAAGAGAGACGGCAGCGACTTCCGGTCGCCTTCGAGGGCTCGGCGTCCATGGGACAACGCTGCTTCGATATCTCCATCCCGAGCCGCTGTGACACCCAATGTCACCCAGGCTTCCGCAATCCGCATGGGCTTGCGAGGGATTCCGTGCGGGTCGGTCGAGGAGTTGATGACCTCTTGGGCGTACATCAGGGCGTTCGCAAGGTCGAGGTATGTCCGTTCTAGACGAGTAGTTCCGAAGTCAGGGGTCGATGTCTGGGCATGAAGAGAGGGCATCCAAGATCATGGTGTGACGCAAGACCTGGATACCCTCTTGACCGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2615661-2619751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061725.1 Micromonospora craniellae strain LHW63014 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2615661 36 100.0 39 .................................... TAGGGCCGCTCAGGCGTTCCAGGACATCGGTAGGAAGGC 2615736 36 100.0 34 .................................... TGGTCTGCCGGATGCGCCACACCTCACCGTCCAG 2615806 36 100.0 38 .................................... ATGGAGGCGAGCACCAGCACCAGGGCGTTGAAGTCCCC 2615880 36 97.2 36 ...................................G GGGATCGGCGCCGGGCGGGTAGCTGCCGCTGGGCGC 2615952 36 100.0 39 .................................... CTCTCCGTCGCCCGTGCGGCGGTGGCACTGGCCGGACAC 2616027 36 100.0 40 .................................... AGGTGGACCCCGGCTACGCCACCATGGACAACGGCCTCCA 2616103 36 100.0 41 .................................... CCGATGTATCCGCTGATGCTCACCAGCCCCTGCGCACAGGT 2616180 36 100.0 35 .................................... AAGCGGTCGCGGTTGCTGATGTGGGAGGTCATCCG 2616251 36 100.0 37 .................................... GTGGAGGGATTCGAACCCTCTCAGCGTCACGCAACGG 2616324 36 100.0 40 .................................... TGGCGAAGAAGAACACGCCGTACGGCATCGACCCGAACGA 2616400 36 100.0 37 .................................... CCCACTGCTCGGCCAGGTCTCGTACCGCATCGTCGGC 2616473 36 100.0 35 .................................... GGCCTGGTACCAGCGCATGCCGGGCGCGAAACTGC 2616544 36 100.0 40 .................................... CTCCGGCCCAGTAGGCATACGGACGGCCAGTTCCTCGCGT 2616620 36 100.0 37 .................................... GAAGAGCCGACTCGGCCGTACGCGCCGTGTTTCATTA 2616693 36 100.0 36 .................................... AGGCTTGAACCCCTTCGAAGGCTTTCCAGTAATTCC 2616765 36 100.0 40 .................................... TCGATGCGTGGCAGGCGTTCGCAAGCGTCGCCAAGGTCGA 2616841 36 100.0 36 .................................... TGCGGCCCGTTCGTCGATGCGGGCCTTCACCGCCTC 2616913 36 100.0 44 .................................... CTGTCGATGACCGCTCTGCCGACCGCGATCCTGCTGGGGATCGC 2616993 36 100.0 39 .................................... GATGGCTCTCTTCGGTGCCGTGCTGGCCGGGATCGTCAA 2617068 36 100.0 37 .................................... GCAGATCGACGTTGTGGCCGGACGGCACGACGACCGG 2617141 36 100.0 35 .................................... TCCGCCGCCGTGTCGGCGGGCGCCTTGGCAGTGAA 2617212 36 100.0 37 .................................... GGCCGATGTCGCCCGCCGAGCTGGCCGCGCGCAAGTG 2617285 36 100.0 39 .................................... GTCGGCGTCGATGTGGTCTTCGGGTAGGGCGCAGACGCT 2617360 36 100.0 40 .................................... TGAAACGCGAACACGTCACCGTGTCGCACGGACGGATCAT 2617436 36 100.0 34 .................................... GAAGCATCATGCCGTCAGCGCCCAGGACGGGGCC 2617506 36 100.0 35 .................................... TCGGGTCCAGGTCCACGGTGGTACGGACCGACTTG 2617577 36 100.0 40 .................................... TGCTGCTCCCGGCCGACGCCACCGCCACCGCCAGGGCCGA 2617653 36 100.0 38 .................................... GATCAGCGCCATCCCAGGCTGGTCCCAACCGCCACGGT 2617727 36 100.0 39 .................................... GTCATGATGTCCTCCGATTGTGTGGTGTGCCGTTCCGTT 2617802 36 100.0 36 .................................... GTTGGAGTGCATGCCAGCGCTCGACCTGATCGCCAA 2617874 36 100.0 35 .................................... CCGAAGCAGCCCCGCCCGTGGATGCACCTGACCCG 2617945 36 100.0 40 .................................... CCGCTCGGCAACCTGCCGACAGTGCGGGGTGCAGCACTAC 2618021 36 100.0 37 .................................... CCAGCGTGGCAATGAGGGCGGCCAGGGCGGCCGTGGC 2618094 36 100.0 38 .................................... CGCAGCGCGTCACGGCGGCGGGCGGATGAGTCGATGAG 2618168 36 100.0 36 .................................... GGACTCGGCCAGGCTCGCGGCCACCCGGTCCATGTC 2618240 36 100.0 41 .................................... CACCGGCCACCCGCACCGGCAGGATCCCGCCGAGTGCCACC 2618317 36 100.0 37 .................................... GATCACCGGCCAAGGAGGGTCCGTTGTCCGGCAAGGG 2618390 36 100.0 39 .................................... CGGCCGACGCTTCCCGCTCCGCCTCGGCGGTGCGCTCTT 2618465 36 100.0 39 .................................... ACTGACAAACCCGTCAGTTCGCGCAAAGCTGCTTGAAGC 2618540 36 100.0 35 .................................... CTGGCGTCCAGCGATGCCAGCAGCCCGCCGGGGTA 2618611 36 100.0 37 .................................... CCAGAACACCGGACCCGTCCAGCTTCGGTTCGGCGGA 2618684 36 100.0 37 .................................... AGTGGTACGACCTAGTCTGGACCCACGAGGCCGTCAC 2618757 36 100.0 39 .................................... GAGTAACCAACACGCCCCCCCTAGGTAGGGGGTCGAGTT 2618832 36 100.0 40 .................................... CCGCCACCCAGCTCGCCGACGCCCAGGCCGCGTACACCGC 2618908 36 100.0 36 .................................... TCGCGTACTGAGAGGGGGGCCGATGACGATCTATTT 2618980 36 100.0 38 .................................... GGGCCTGGCGACGGGCAGGTCGAGACCGACGGCACGGT 2619054 36 100.0 37 .................................... GCCGGGGCGTTGGAGCTGCTGGACATGGTGTGCCCGG 2619127 36 100.0 32 .................................... CCGGCCACATCTCGTGGCACAACTCGACCGGG 2619195 36 100.0 39 .................................... GTCGAAGATGGCACCCGACGCGGGCGCCGGCTTGCCCTG 2619270 36 100.0 38 .................................... CTGCGCGACCCGTCGATCCGGCAGACCATCGACGACGA 2619344 36 100.0 39 .................................... CGGCGGACCGGCGATCACCATCGGCACGGCCACCGTCTC 2619419 36 100.0 37 .................................... CTGCCCGTTCCGAGGGCTCCCCCGCCTACATCGACCT 2619492 36 100.0 35 .................................... CTCCGCTGCGCTGCGTTCCTCGCACTCACCGGTCC 2619563 36 100.0 42 .................................... GTTCTTCTCCTTGTTGCGGTTGGTGAGTGGATCCGCCGGGTT 2619641 36 100.0 39 .................................... TCCAGCATCATGTCAGCACTCCCCGGTCAGGTCGGCCAC 2619716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 56 36 100.0 38 GCCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGGC # Left flank : CGTGCTGCGGCGAATCGGGACCAAGCCGACCCGCACCGCAGCCGCGCAGCGGCGAGGAGGGGAAGCGGCGCGGTAGGGCCTTTCTGGGCCAAGCGGCTGCGACGGGCAGGACTGCGTGCGCCGCATCCGCGATCTTGAGCAGCGACCTGTGCAAGATCAGCTGTACCCAGCTCTGCACTCCAACGAGTACCCCGACAACCGCTGCGGCGGCACCGGCGCTGCCTCGCCCGCCAAATACTTCCGCACCGTCTTACGATCCAGCCCGGTGTCCCGAGCGATCTGCGACAGACTCAGCCCCGCCTCGTGCAGCGCACGGTACCGGCGCAGTTCCAGCCACCGCTCCGACCGCAGAACCATCGCCGCCCTCCACCCCAGCTCATACCGGGCGAAGCATTACTCATCGGACACCCCACCAAACCACCGCCACGCCGCGACCTGGCCACGTTCATCCGTACCTACCTGGGGAAACCAACCCGTACGCCGACAGACGTCGTCGACCT # Right flank : CTGGGGCAAGATTTTAACCGCCCTGACCTGCACCTGAACCGGTCTGCCGCGAAGGGTGCGCTTCCTGCAAGGCGGAGTAGCACCTCAAGTCCATGAACCAGCGCGCACCTACACGTAGTGAGCTGGGATGACATCCTTGCGACGGGTCCGCGCTCAGAGGCGGGACGACGCAGGCTTCGCCGGTGGTTCAGAGGATCGCTGGGCCGTGGTCGGTGATGGTGCGGCTGCAGCCGATCACGTCGAGCGATCGACGGTTGTTCGCGCGGAGGGTACCCAGGTTGCAGAACAGGACGGAGTCTGTGCCCTCGTCGATCATGTCGGTGAGTTGGGTGCGGAGCCGTAGGAACTTTGCTGGCCGGGTGTCCACGATGAACACGCTGTACTGTACGCGGTCGCCGTATGATTCGAGTTTCTTGGCGACCTTCGTTCGGCGGACATCGTCGGAAATGTCGTACGCGATGAGGTAGCGCCGCACGTCATCAAGGCTCATCGGGTCTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 4 2635557-2634275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061725.1 Micromonospora craniellae strain LHW63014 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2635556 36 94.4 35 C..G................................ CCGAGGTACGGCGGTGCCCACAGCTGCTCACGCTC G [2635552] 2635484 36 100.0 38 .................................... GTCGACGTGACGGCCACGCCGTCGCGGCGGGTCGTGGA 2635410 36 100.0 38 .................................... TCCCGCTCCCGGATCAGGGCGGCGATGCCGTCGCGGGT 2635336 36 100.0 37 .................................... CTGACATCACCGATCCGACAAGCGCCGCCGCCTGGAC 2635263 36 100.0 38 .................................... GCGTGCGCGATCGGCGCGGGTGAGGCGTGCACGCTGAT 2635189 36 100.0 40 .................................... CCCGGGGCGGCATGGCCTGCCAGGTCATGCCCTCTTCGGG 2635113 36 100.0 36 .................................... CAGCAACCACCCGATGTGCCACGACTGGTCAAGGGC 2635041 36 100.0 39 .................................... CGCCGGGCCTGTGGACAACCCCGCCGCGACTCCGCCGAT 2634966 36 100.0 38 .................................... GTGGCAGACCCCCCGGAAGGCGTTGGCGTATGTCACCG 2634892 36 100.0 37 .................................... CTGACCAGCACCAACACGGAACCGGCCGGGGGAGAGG 2634819 36 100.0 34 .................................... AGAACCGGAAGACGGCCACCAGCACGTACGACGG 2634749 36 100.0 38 .................................... GCGCTATGACAAGGGGGACCTTCCGTGGCGTTCATATC 2634675 36 100.0 39 .................................... AGCCGTGTCATCTCTGTGGCGGACGTCCTTGACGTGGGT 2634600 36 100.0 33 .................................... AGTCCACCTCGTCGACGCCGCTCCGGCGACGGC 2634531 36 100.0 39 .................................... GTTGATCGTGCGGGACGCGGACAGCGTGCGGGAGGGCTG 2634456 36 100.0 35 .................................... CCGTCGACGCGCTGATCGGGCAGATCCTGCGGGTC 2634385 36 100.0 39 .................................... TTCATCAGCTTCCGCGACAACCACCAAGTCCGCTTTTCG 2634310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 99.7 37 GCCTCAATGAAGGACGGCTCCGGTGGGAGCTGCGGC # Left flank : CTATGAGCTGGTGACGTTCGCGTTCTGCGGGTACGCGTTTCGTCCCCGTAAGGCCTGGGACAAGATACGGCAACGTCGGCGAACAGGGTTCCTGCCGGCGGTGGCCCCGGGGAAGCTGACCGATATGAGCCGCAAGGTAGCGTCCTGGCGGTTACATCGACACACGACCTGGAACCTGAACGATCTCGCGGAAGAAGTGAACCCAGCCCTACGTGGTTGGCTGAACTACTTCACCGCGTTCTATCCGAGCGCGGTCATCCCGATCGGCAAGCGCGTCGACCGTCATCTGATGCGCTGGGCAAGGTGGAAGTACAAGCGACTCAAACCCAGCCAAGCCCGTACGCGTGCATGGTTACAAGAGGTCCGAAAACGAAAACCCGGCCTGTTCGCGCACTGGACGCTGCGGTACACGACCTGACAACCGAACGGCACGAGCCGGATGAGTCGAGAGGTTCACGTCCGGATCTGTGGGGGACGGCGGGTGAGACTCCCGCCGTCTA # Right flank : TGGGTCAAAATTCTAACCGCCCTGAGCTGCGCCTGAACGGGTGTGCCGCGAAGGGTGCGCTTTCTGCCAGGTCGAGAGCGACTCATGGCCATGACTCCGCCCACGCCATGCGGCATGTGAGCTGGGCCGACACTCTGGCGACGGGTCCGCGCTCAGAGGCGGGACGACAGAGGCGTCGCTGGCGCATGGGCCAACAGATTCACTGGTGCGCGGCCGGTAATGGTTGCGGCTGCGCGATCCATTGATCGAATTGCATCAGAAGGCGGTCGGTTGCAGCCATCCTCCGATTGGTGCTGGTGCGTCGAACGCTCGTGGGATGAAGTCGGGAGGTTGGTCACGCCATCCTGGTTGCGGGCTGATCCAGTGCCTTGATCGGCTGGCGTCCGGTGTCGGTCAGCGGTGATGCATCCACGTCCGGGTGATTGCACCTCCAATCGCCGGCTTGTCAGGATGGGTGCCGACTTCTCATGTTGGGCGGACTGTTGGATTTCTCTCTCTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGACGGCTCCGGTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 5 6561951-6559603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061725.1 Micromonospora craniellae strain LHW63014 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6561950 29 96.6 32 ............................G GCGACCTCGTGACGACCAGTGGAGCATTTTTA 6561889 29 100.0 32 ............................. ATCCTGGCGACCCCATCGTTGCCGTGCGACTC 6561828 29 96.6 32 ............................G CGTCGCGCCGAGCTGGCTGGACGACCCCGAGT 6561767 29 96.6 32 ............................G CTGCGACCGGCGCCCCGGTTCCGCAGGATCAC 6561706 29 100.0 32 ............................. ACCCACCGCAGCCTGCCCCACAAGGTGGCGGG 6561645 29 100.0 32 ............................. GACACGTGGATTCAGTGGGCGCGGCCCGTCTG 6561584 29 100.0 32 ............................. TCCAGCGGGAGCTGGCCCGCAACCCGCTCTGA 6561523 29 100.0 32 ............................. TTCACAGTCCGTGCATCATTCGTGCCTTCCGG 6561462 29 100.0 32 ............................. CCGACGGTCGTCTTCGTGTGCCAGGAGAAGGA 6561401 29 100.0 32 ............................. AGCAACAGCAAGCCGTTCCGGTTCCACTACAG 6561340 29 96.6 32 ............................A GAACGTGGCCCGAGGTCGGCGAGGTCTCCGCC 6561279 29 100.0 32 ............................. TGCCTGCGTTGCGCCTTGCGCGCGTAGTAGAC 6561218 29 100.0 32 ............................. GCTAGGCGTTAGGTGTCAAGCTCAGGGACTAA 6561157 29 100.0 32 ............................. CGCACCGGCTGGGCCAACAGCCTGTACGACCG 6561096 29 100.0 32 ............................. GAGCGCGGTGCCGACGGCTTCGGAGGTGCGTT 6561035 29 100.0 33 ............................. CTGGCAGCACTGCGCCCGGATGGCGTTCGTGGG 6560973 29 100.0 32 ............................. ACCACCGTTCCGGGTACGTCTGTGCTGGAAGT 6560912 29 96.6 32 ............................T CGTTCAGCCGTACATGTTCGGACACCCATGGC 6560851 29 96.6 32 ............................G TCGGGCATCGCCGAAAACCGGCCGATCAGCAC 6560790 29 100.0 32 ............................. TGTGCACTTCGATGACAAGGGACGTCGCGCTC 6560729 29 100.0 32 ............................. TTGCGGAGGACTGGCGCAGTGGCAGGAGATGG 6560668 29 96.6 32 ............................G GGAAAGAAGCGTCCCGACGGTTCAAAGGGAAT 6560607 29 96.6 32 ............................T CCGTACCCCCAAGGGTAGGGTCCGGTCCCTGG 6560546 29 100.0 32 ............................. CGGTCAGCTTGAGGGCGATGAACACGATGGTC 6560485 29 96.6 32 ............................T CGGACGTCGTCGGCGATGTAGGCGCTGCGGCA 6560424 29 96.6 32 ............................T CTCGGGGGAGATGGTGTCGAGGATGGTCGTCT 6560363 29 100.0 32 ............................. ACCACCCGCTTGCGCCTTTGGGGAACGCCGAA 6560302 29 100.0 32 ............................. ACCACCCGCTTGCGCCTTTGGGGAACGCCGAA 6560241 29 100.0 32 ............................. TACAGCGCCTCGACGCGATGTGGGCCGACGCC 6560180 29 96.6 32 ............................G TGGTCGCAGGCTGGTGGAGCCAAGGCCAAGCC 6560119 29 100.0 32 ............................. TTCCAGTGGTTGGCGGCCATGCGGACGCGGAC 6560058 29 100.0 32 ............................. CCTGACCACAACGCGCAGACCGCGTACCGGGA 6559997 29 100.0 32 ............................. CCTGACCACAACGCGCAGACCGCGTACCGGGA 6559936 29 96.6 32 ............................G ACGGTCGACGGTTCCCGTGACTACCGGCATCT 6559875 29 96.6 32 ............................G ACGGTCGACGGTTCCCGTGACTACCGGCATCT 6559814 29 100.0 32 ............................. GTGACGCACGCTGTGGACGGTGCCCCCGGCGT 6559753 29 93.1 32 ......T.....................G AAGGCGAGTACGACCACGTCCTGGGCAAGAAC 6559692 29 93.1 32 .....................G......A GATCAACTCCACCTGGCGCAGCGCGAGCAGCG 6559631 29 79.3 0 ......T............A.G..GGG.. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.0 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GTCGCTGATCGCACTGCCTGCATGTCGCCGCTGGCCAGTTGTTCGCGGCCGTTGCGTCGTTTGGTCAGCAGCCCGGCTCTTTCCAGCACGGCGACGTGTTTCTGTACGGCGGCGAAGCTCATGTCGTACTTGATGGCGAGTGTCGAGATGGAGTGTTCTCCGGCCAGCACGCGGCGGAGGATGTCGCGTCGGGTGCGGTCGGCGAGTGCGTGGAACAGGGTGTCTGCCCGGTCCTCATTCGTCTCCGTCACCAGACGACCATACAACCATCCGGTTGTACGTTGCAAGTGTTTCCACCCGCCAGCGGCTTTCGGTCACCCCGGTGGGATCCGGGCTGCGCGGGCATGGCGAGACGTGTTCGGCCGTCGAGGCGCGTTAGGCTGACGGCGGCCTGCGAGATGCTCATCCGGCCTGTCCGTCCGAAACCGAAGGGCATGATCTTGAGAGTCGAAGTGAAGAGAAACGGCAAGGTTGATCTTTAGCGCCGCAGGTCAGGAAGT # Right flank : ACCCGGGAGTTGGGTGGGCCAGTTGCCGTGGGCTCGCCGGGGCGGTTACGGCGATGGGACGGCGGGGCTCTCCGCAGGGCGGTCGTGCCGTCGCCGCAGCGTCCGCGCCACGACCACCGGCAGGACGCGTAGTACGAGCGCCAGTATCAGCGCCAGCGTGGCGGCCTGTCGCACCGACAGTCCCTGCCATGCCAGCACCGCACCCGCACCCACGCCGGTCAGCAGCGCGCCACGTACGACGCGCAGCGTGACGACGAGACTCGTGGGCTCCTCCCCGTCCCGATCGGGCCTCGACCACAGGGTGCTCACCGCTGCCGTGATCGCGAACAGCACGGCGATCAGCAACGCCCAGAGGGCGACCCGGCCGACGCCGGCGTCGTCGGTCAGCGACGGTGCGGCGAAGGTGGCCGCGGTGAGGATGACGAACGTCGGCGGCCACGTCAGGACGAAAGCCGCCAGCCCGGTCTGGAGCGCTCGGCGACCTCGGCTGACCTGCGGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //