Array 1 1651-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMM01000030.1 Streptomyces scabiei strain S58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1650 29 100.0 32 ............................. ACAGCGATCCACCGCCACCGCCCTCCGGCAAG 1589 29 100.0 32 ............................. TTGCGTCGCCGTACGGGCAGGGGGTGACGGAG 1528 29 100.0 32 ............................. TCGCTGTTCCTCTTGTGTTCGAGGGAGTCGGC 1467 29 100.0 32 ............................. CAGTGCGGATGACCGGGTGCGAGCACCACGGT 1406 29 100.0 32 ............................. CAGCAGACGACAGACGAGCCGCCCGTCACCCT 1345 29 100.0 32 ............................. CCGTACAGCCGTTCGGCCGTGGGCGACGGACT 1284 29 100.0 32 ............................. CCGTACAGCCGTTCGGCCGTGGGCGACGGACT 1223 29 100.0 32 ............................. GTGGTCGTGGTGGTCGCGCAAGAGCTGGCCCG 1162 29 100.0 32 ............................. CAGCAGTTCACCGAGGCCCTGGGCGGACAGGA 1101 29 100.0 32 ............................. GTGGCGTAGGCGGCCGCAGCGTTCTTCGCCGC 1040 29 100.0 32 ............................. TTGGCGGGCATGACGCGTGAGCTGCCGGAGCT 979 29 100.0 32 ............................. CAGTACCTCGACTCCCCCGAGGTGCCGCCCGC 918 29 100.0 32 ............................. GCACCGAGCGCGCTGTCCCTCCCACCGCGTGG 857 29 100.0 32 ............................. TTGGCGGTGCTGTTCGTGCCGTTGTCCCAGCC 796 29 100.0 32 ............................. CCGGACGACCCCCAGGACCAGGACCCCGGAGA 735 29 96.6 32 ............................A ACCACGCGGTGAACGGCCGCAGTTCCAAGAGC 674 29 100.0 32 ............................. AAGACCACCGCGCTCAGCTCCGGCATCGCGGC 613 29 100.0 32 ............................. TCTGCCTCACCGCCCTGGAGTCCGTCGCCCTC 552 29 96.6 32 ..........A.................. ACGCGGGTGGGCTTGCGCCACTTCAGGGGGTC 491 29 96.6 32 .......................C..... CTCCAGGCCCACGCCGAGGACCAGGCCAAGGA 430 29 100.0 32 ............................. ACCCGCAACCGGAAGCACAGCCTGTGGACGGC 369 29 96.6 32 ....C........................ TCGAAGGAGAAGACGCGCGGCTCCGCCCCGGG 308 29 96.6 32 .........A................... TGCAGCGTGTGCTGGAACGACGAACAGCAGAC 247 29 93.1 32 .......T.....A............... GACATCGCGCCCATCGTGTCGTTGGGCGCATC 186 29 100.0 0 ............................. | C [182] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGCTCTCCGCGCGAGCGGAGGTGATCCG # Left flank : ACCGACATCCAGGACCTCCTCGATCCCGGATCCAGCCGGGACGTCCCCGACCCCGAGGAGCAACTCGTCGACCTGTGGGACCCGGTCACCGGCCCCGTACCCGGCGGCGTCAATCACGCCGCGGGCGCCTGACCGCCAACGCCACGCGAAGAGGAAGACCACACACCCGCCATGGCCTCCATGATTGCCATCACCGCCACCGCGGTCCCGGACCACCTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTAACCCCCGAGCTGTACGTGGGCACAGTCTCAGCCCGCGTACGCGACGAACTCTGGGACCTGGTGACCGCCTGCACAGGCGATGGGACGTCCGTACTGGTCCACCCCAGTGACAACGAGCAAGGCTTCGCACTTCGCACAGCGGGAACCCACCGGCGCCACCCACTCGACTTCGACGGCATGACCCTGATCGCGTTCCAGCCAACAAGCAAAGAAACCGCAAAGTCACTCTAACGGTGCAGGTCAGTAAG # Right flank : GCCGTGGGTCCTCTCCAGCCACTCGGAGCACTAGTACTGCAACGGTCTTTGCCGTGACTGCTGGCCAGCTCTGTCGTTGTTGTGGTCATGGGTGGGGACCTTGCTGATGTCAGGTTGTGGGCGGGTGAACTGGGTTCTCTGCATGAGCGGTTCGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11383-15247 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMM01000030.1 Streptomyces scabiei strain S58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11383 29 100.0 32 ............................. TCGCCTACAACCACGGGGTTTTGCCCCCTGTC 11444 29 100.0 32 ............................. GCGACGGGCCCACCTGCACCGGGGCGCTCACT 11505 29 100.0 32 ............................. CAGGTGTTCGACCGCCGCCGGATCCTCGCCGA 11566 29 100.0 32 ............................. CAAGGAGGACGAGGAGTTCAACCCCTGGCGCT 11627 29 100.0 32 ............................. CTCACCACCAACCCCGGCGTGTGGGTCATGGC 11688 29 100.0 32 ............................. GATTTTCAGACGCTGGACGGGCGTGTGGCGGC 11749 29 100.0 32 ............................. CCGCGCAGGTCGGAATCATCGTTTTCGCGCTG 11810 29 100.0 32 ............................. CCGCCCGTACGTCCGCCAGGAGTACGTGGCCT 11871 29 100.0 32 ............................. GCGCCGCCGCGTATCTGCAGGCACTGTGACGA 11932 29 100.0 32 ............................. GACCCACAGCACCGGCTCCAGGCTGTCACTCT 11993 29 100.0 32 ............................. CCGGACGCGCGGCAGTTCCCGGCTCCGGATCT 12054 29 100.0 32 ............................. GCGCGGCGGCTGGCGTTGGAGGCCCGCTACCC 12115 29 100.0 32 ............................. TCTGCGGACTCCGGGACGTCAGGGTCGTACCA 12176 29 100.0 32 ............................. TCCCCCACGTCCGAGGCGATCAGGTCCGCGTC 12237 29 96.6 33 ............................A GCTGGGCGGCGGCTACCCGATGGGGCCGTTCGA 12299 29 100.0 32 ............................. CGGCGAGTGGCCTGGTCATCCAGGTACTCGTC 12360 29 100.0 32 ............................. CCCGAAGCGTCGTTGGGTCTCTCCCTGGCGAC 12421 29 100.0 32 ............................. TCCACTCCGTTCACCCGGGACCAGGGCATCGG 12482 29 100.0 32 ............................. CACTTCCCGTCCGCGCTGCGGTCGGGGCGCGA 12543 29 100.0 32 ............................. CAGACGTTCTTCGGCGCGGACCTGCGCGAAGT 12604 29 100.0 32 ............................. TCGCCTTTGGTGTACGGGGATTCGCACCCGGC 12665 29 100.0 32 ............................. GCACGTGCGTAGTCCTCGGTCTGCAGGAGGCC 12726 29 100.0 32 ............................. CTGCCGTTCCGGGCGCCGGAGGACCGGCCCAA 12787 29 100.0 32 ............................. CTGCCGGTCGATCTCCTCCAGTTCGGCGAGGA 12848 29 100.0 32 ............................. CGACACGCCGGGATAGCGTTCTTCCAGCTCAA 12909 29 100.0 32 ............................. AAACGGGGCAATGCCGGACAGGTCTACAACGG 12970 29 96.6 32 ...........A................. CCTCCAGTAGGCGATCGGCTCAGCCTGGACAT 13031 29 100.0 32 ............................. TCCGCGACGCCGGGACCGACGGCAGCCCGAAC 13092 29 100.0 32 ............................. CTCAAGGTCAGGGAGTTCCAGGTCCGGGCCGA 13153 29 100.0 32 ............................. GACCGGCGCTAGGCTTCCCCCTGGCGCTGGAC 13214 29 100.0 32 ............................. CCCAAGGAAAAGCGTCCCGCTCCGGTGTACGC 13275 29 100.0 32 ............................. ACCGGGATCGGGCTCACACGCTGGACGTTCGC 13336 29 100.0 32 ............................. GCGCCCTTCAGGGACACCGCCTCCGGGGCCGG 13397 29 100.0 32 ............................. ACCGGCCACGGTCTCGCCTTCGACCCGCGGTA 13458 29 93.1 32 .......G....................C CTACCGGCGGGTACGCGCGCGCCGGGCCAACC 13519 29 100.0 32 ............................. CTCGCATCGACGACGTACTGCTTGGTCGTCAT 13580 29 93.1 32 .....T...................T... GCCCTGTGTACGGGGCCGCCATCCCTGAGTTC 13641 28 93.1 32 ........-................T... TACGGGCAGCAATACGTCTACCGGTGCCCCAA 13701 29 96.6 32 ...T......................... ATGTCCACGAGCGTGCGTACCTGCCTGTCTTT 13762 29 93.1 32 .....G................C...... AACAAGATCGACCCGCGCGTGTACACCGCGCA 13823 29 100.0 32 ............................. AAGCGAGCCAAGCCCCCGACGCTGGAGCCGGT 13884 29 96.6 32 ..........T.................. ACGCGAATGCGGATCAAGGCTTCGTCGCCTGG 13945 29 89.7 32 A...........T...T............ ACGGCCAAGGCGTTCGAGGACGCCCTCGCCTC 14006 29 86.2 30 ...G........T............GT.. TGCCACATCCGGGACCTCTTCCCGAAGTCG 14065 29 86.2 32 AC.........A............G.... GGGAAGTACTCCCGCGCCGCGGAGACGACCGG GC [14078] 14128 29 82.8 32 .G...T..T...T........A....... GACAATTACGGCATCGAGTAGCCGGGAGGCAG 14189 29 86.2 30 .AA.....T..A................. TCGGCGTCACGACGATCGGCATGGACCGTC 14248 29 86.2 32 ............TA..T........T... GCGACGATCACCGCCCCCACCACCACGGCCAA 14309 29 86.2 32 G...G.......T............T... ACGGGAATGCTCACCTCGCAGCAGATCCCGCT 14370 29 93.1 32 G....G....................... CCGCCGACGGTCGAGGAGCGGCTGACCGCGCT 14431 29 93.1 32 ...........AT................ GCGGCCTACGAGGCCCGCTACGCCCGCGTCGC 14492 29 100.0 32 ............................. GGTTGACAGAGTTTTCCCAACCCCCCGCCACC 14553 29 100.0 32 ............................. GTCCGCCGCCGGACGGTCCGGCTGGGCAACGG 14614 29 100.0 32 ............................. GCCCGCAAGGACCTCCCCGGCGACCTGACCAA 14675 29 96.6 27 ...................G......... GCCGAGGACGCGGAACGCGCGCTCGTC 14731 29 93.1 32 ...G.....T................... GTCGGCGACCGGGAAGCGTGGGGCTGGCTGCA G,T [14738,14740] 14794 29 100.0 32 ............................. AACATGCTCGGCTCGGTGAAGAACGCGGCCGG 14855 29 100.0 32 ............................. GGGGTGCTGGCGGCGGAGATGGAGATGAAAGA 14916 29 100.0 32 ............................. ACCACGGGGTTCCCACTGACGTTGTTGCTGCG 14977 29 96.6 32 ................T............ GCTGCTCCCGACATGCCGTAACACGTACCGAT 15038 29 96.6 32 ............A................ CACCACGGGTCGTGGATCGTGTGGCGGACCGC 15099 29 89.7 31 .....T.......AG.............. CCGCATCGCCGCCGGTCGACGCACGCCTTCA 15159 29 100.0 31 ............................. GGCCGAAGAGAGCCCGCCGGTTGGACTTGCC 15219 29 79.3 0 .....GC....A.A...A......G.... | ========== ====== ====== ====== ============================= ================================= ================== 64 29 96.9 32 CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Left flank : ATCGCTGCGAACCGCCACAAACGCCTCCGGTACCTGCGCCTGGAACGGAGGGGTGATCTTCCCCAGATCATGCAGCCCCGCCCAGAACCCCAGCACCTGTCGGGCCTCGCCGACTGTCAGCCCCAGCGCCCGCGCGACCTTCTCGCGCACCTGCACGCCCAGCAGCACATCCCACAGCGCGCCGAACACCGCTGCGGTGTCCAGAAGATGACAGATCACCGGGTACGGACGCGGAAGTCCATGCTCCTTGCCCCACAACCGGATGTCGATCGGGGGATGTCCAGGCGAGACGGCCTCACGCTTCATCATGGCGGCAACGAATAGCAGGCCCCACTGACAATGCGCCCCCACCTGCGCGAAGCCCGAACGCAGCCAGCAGAGGACCGTAAACTCCACACCGTGGGGACGAAGTCGACGCGAGAACTTGCCGACTCACAGCAAGCTCAGCCGTACGTGGTAAAGAACTCGCAAAGCACCTCAAGAAGCCCAGGTCAGTAAGC # Right flank : GGGGGCGGAGGTGGAGAAGACGTACCGCGAGGAAAACGGCCCGTACAGGAAACGGCCCGACACCTGGGGTGCGCGGGACCGTTGTGGACGTTCACTCGGCTTCGTAGAAGGCGTTTGTCTTTCGGTACGGGGGACGTCCGCGCGCTGGCTGGTTCACACTGCGAGCTTCACAGTTTCGAGGAGGGCGCACTATGGCGCAGGTGGATCAGCAGGCACTGGTGGCGCGGCGGTTCGGCGACATCATGCTCGTGCGGGATGTTCCGTCCGGTCAGGACATTGCCGCAGGGGAGGCGGCCATTGAGGCGGCCGGCTGGACGCTGGCCAGTAGGAAGCAGCGGGGCTTTCTCAACAAGTCGACGCTTCTGTACTTCGCAGCCCCGTCGAAGCTACCTTCCGGCCGTCGTCTCGGCTCGCGGCCTGAGCGGAGGTGAACCGTACCTGATCAAGATCGGGACGAGGCCGGGGATCTGCTCTCCGCGGGAGCGGAGGTGAACCGGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCTCCGCGCGAGCGGAGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 15653-15986 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMM01000030.1 Streptomyces scabiei strain S58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15653 29 82.8 32 .G....G.G..CT................ TACCTGATCAAGATCGGGACGAGGCCGGGGAT 15714 29 96.6 32 ............G................ GCCGGCCGGGTCCTGTCTCAGGCGAACTACGA 15775 29 100.0 32 ............................. GTCTCGTGCAGGGTCTGCTCGGCGAGGACGGC 15836 29 100.0 32 ............................. GGCGAGGACGCCCCGATCAAGCAGGACGACCA 15897 29 100.0 32 ............................. CTGGGGAGTCAGGTCTGGACGAGAGGGGTGCC 15958 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Left flank : CCTTCACTGCTCTCCGCGCGAGCGGAGGTGAACCGGGCCGAAGAGAGCCCGCCGGTTGGACTTGCCCTGCTGCCCGCACAAGCAGAGGTGGACCGGGGGCGGAGGTGGAGAAGACGTACCGCGAGGAAAACGGCCCGTACAGGAAACGGCCCGACACCTGGGGTGCGCGGGACCGTTGTGGACGTTCACTCGGCTTCGTAGAAGGCGTTTGTCTTTCGGTACGGGGGACGTCCGCGCGCTGGCTGGTTCACACTGCGAGCTTCACAGTTTCGAGGAGGGCGCACTATGGCGCAGGTGGATCAGCAGGCACTGGTGGCGCGGCGGTTCGGCGACATCATGCTCGTGCGGGATGTTCCGTCCGGTCAGGACATTGCCGCAGGGGAGGCGGCCATTGAGGCGGCCGGCTGGACGCTGGCCAGTAGGAAGCAGCGGGGCTTTCTCAACAAGTCGACGCTTCTGTACTTCGCAGCCCCGTCGAAGCTACCTTCCGGCCGTCGTCT # Right flank : GAGACACCAGCGGCCCCCGATCCCTGCTCTCCGCGTGAGTTGACCTGCTGACAGGGTGGATCCTTCGCACGTTGGAAGGGGAATCCGCTGCTCTCGGGTTTGGGCCCTGGCTCCCAGCTGGGGGACAGGCTGCTGCGGAAGCCGAACTTGTCCTTCCGGGACGCGTTCTGGACGTAGGTTGGACACAAGGATCGGAAAAGACTGACAAGGGCCGAGAAGGAATGAGGCACCAAACCGCCTCTGAACAGGGAAAACGGCCAAGACGAGCATGGATCGACAAGGGTCGCCAAGATCCTCAAAGGACTCATAATCCGTCGGCCGTGGGTTCGAGTCCCACCCGCCCCACTTCTGCAGGTCTCTGACCTGCGGAAATGTTCATTTTGTCCTGTCGGATCGTCAACTTTGCTTGAACGGACTGAATCCGCTGCTCGCGAGTTCAGCAGTGTTGCCGCCAGCGAAAGTCGAACCGTTCTGACCTGCATAGATGCCTTGACTCGTAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCGCGCGAGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCTCCGCGCGAGCGGAGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //