Array 1 54621-55720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFY010000015.1 Desulfovibrio piger strain PG-251-APC-1 Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 54621 33 97.0 35 ................................C GGAAACAACCTGCGCGTGGAGCAGCTCCTGTGCCG 54689 33 100.0 33 ................................. TTTTTATTGACACAGGATAGCAGTTTCCCTATC 54755 33 100.0 35 ................................. AACGGTGGATGGCGCGAGGGCGACTATTGGCTTGA 54823 33 97.0 34 ................................G ATAGTAAAGCGCTTTTCATAATAGACGCGTACAA 54890 33 97.0 36 ................................C GGCGAAAAATCGTCAATTGTGTAAACGTCATCCGGA 54959 33 97.0 35 ................................G TCACTTTCTCGCGCATCATGGCGTATATCCTTATC 55027 33 100.0 33 ................................. GAAAAGATGGCGTCATTGTGTACAGTTTGTCGA 55093 33 97.0 32 ................................G GCTTGCGGCTCAAAGCGTAGCCAAGCTGGCAC 55158 33 97.0 34 ................................A TAATTTGCCTGATTGAGAGCTGCAGCGTTGGCAC 55225 33 97.0 32 ................................A CCGCACAAATAATACCGTATCTTCCGCTTGCC 55290 33 97.0 35 ................................G TGCGTTCGATGCGGTGCTGATGATGCTGCTCCCGT 55358 33 100.0 32 ................................. CCGCATAAATAATATCTAATCTTGCGCTTACC 55423 33 100.0 34 ................................. CGACCTCACCCGTGATCTAATCGACGAGCTGAAA 55490 33 97.0 33 ................................C ATCGTCACGGTGATATCTTTGCGAGTATATCTT 55556 33 100.0 32 ................................. CCGCATAAATAATATCTAATCTTGCGCTTACC 55621 33 100.0 34 ................................. CGACCTCACCCGTGATCTAATCGACGAGCTGAAA 55688 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 98.2 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACT # Left flank : GAAGCCTATCCCCCCTTTGTCGTGAGGTGATCATGGTCGTCCTTGTCAGCTATGACGTGAATACACAGGATGCCGCAGGCAAACGCAGGCTGCGCCGCATAGCCAGGCTTTGCACCAGCTGGGGGCAGCGGGTCCAGTTTTCTGTTTTTGAGTGCCTGCTCGATAATGCCCAATGGCAGGTCTTGCGTGCGCAGCTCCTGGACGAGATGGACCCGGAACGGGACAGCTTGCGCTTCTATTTTTTGGGGAACCACTGGCGAAGCAAGATAGAGCATATCGGCGTCAAGGCAGCCTACGATCCGGAAGGTCCGCTGATATTCTGATCGAGGACCTCTATGGGGCGTCTTTTCCCGGCAGGATATCGATGCCTGTTATATATTGATATCATTAAAAAATATATTTCCAGTTTGAAAAAACGTCCTGCCTTTGACCTGAATCTTTTTTCATCCTCGAAAAGGATTTGCTAATCACGGGAATCTACTGGATAAAACATGGAAACA # Right flank : | # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFY010000010.1 Desulfovibrio piger strain PG-251-APC-1 Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 45 33 100.0 34 ................................. CTTTTTACCCACGGCCATCTGAAAAACGGCATTG 112 33 97.0 37 ................................G ATTGCAAGGAATGTCTTTTTGTCGAAGACACTGACAG 182 33 100.0 35 ................................. ATGTCCTGGCGTCCATCGTCGGAACCAAAGATGAC 250 33 97.0 35 ................................A CACGAGGCGCCGCGCCGGTGGAGATGTGGACCCAA 318 33 97.0 34 ................................A TGGTCAGGGCCGTGGATGCTTCCGGCGCGCGCAG 385 33 100.0 33 ................................. TGTTCCTGCTGCTGTGCTTCCCATTGTTCATAC 451 33 100.0 34 ................................. AACTTCAGCACGTCGCGGTCGGCCTGCCCATAGG 518 33 97.0 33 ................................T TCCGTCGCGGACTGCTCGAACCATTGCGTCTTT 584 33 100.0 33 ................................. CTCCTGCCTCATTTCCGGCGGTAACTGTCGTCC 650 33 100.0 34 ................................. ACCAGGGCCAGATGATTGCCCCGGATGTTGCGCA 717 33 100.0 35 ................................. GTGGCGCAAGGATTGATCTTGACGCAGCAGGGCGC 785 33 100.0 32 ................................. CGAAAAATCCCACTGTCGATACGCCATCGCCG 850 33 100.0 33 ................................. AGGGCGGAATCTGGCCGGTGAGGGCGTCGTATA 916 33 93.9 34 ..T.............................G ATCAGCCCCGCTTCTGGCGCGGCTGGCACATCAT 983 33 87.9 33 .........T......A...A...........T GATGCGCATAGTTTGCCTGATTGAGAGCTGCGG 1049 32 78.8 0 .....C....T.A......T..-........TG | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 96.8 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Left flank : GATTGAAACTCGACCTCACCCGTGATCTAATCGACGAGCTGAAAG # Right flank : GGGGAGGCTCGAGCGCAGTTGCAAGCCCGCATGTCATGACGCTCCGTTGCGGATACATGACTTGAAGCTCCCTGCAAAAGAGTATCCGAAAGCTGGCCTAAAACAAAAAAGCCCTCACGGAGATTTCCGTAAGGGCTTTTTGCTTTTTCCTGGAGCTGGTGAAGGGACTTGAACCCATAACCTGCAGATTACAAATCAGCTGCTCTACCGATTGAGCCACACCAGCATTTCTCCTCTTTTAGATGAATCCTGACCGCTTGGCAAGGGCTTTCGCACAGGGGGCTTTTCACCGGCCGGCTCTCCTGCCCTCAGCATCTGAAGGACAGCAGACGGCTCTCAAGCGGCTACCGCTCTGCCGCTGCCAGCAAGGGGACGAGCCCTTCCCGGCCGCAAATAGCCAGCGTCAGATGCTCCCGGGCGCGCGTCATTCCTACATAAGCCAGACGCCGCTGGCGGGGCTTCTCCGGCTGGAGGCGATCCATGCCCAGCAGGAAGACATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23637-24002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFY010000028.1 Desulfovibrio piger strain PG-251-APC-1 Contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23637 36 100.0 30 .................................... GCTGGGGAGCTGTTCCCCCGTCTGTGTGTA 23703 36 100.0 30 .................................... CTGCCTCTGTCATTTCCGCGGAATCTGCCC 23769 36 100.0 30 .................................... CCATCATGTCTGTGATGGCGGGCATTTTGG 23835 36 100.0 30 .................................... GGACCAGCTCATGGCCCGCATGCACGCCGC 23901 36 100.0 30 .................................... TGAGAGGGATGGACGGCAGTTGCCGCCAGA 23967 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Left flank : CCGTGCGTGCCTATTATGCCGAAAAAGGGCCGCTGCCGCCCTTTCCCCAGCTTGGGGAATAAGGGGGGAGCATGCCTGCGGAAGAGGTGCGATACATGCGTTTGCTGGTCTTTTTCGATCTGCCGGTCAAAACAAAGGATGACCAGCGGGAGGCCAACCGCTTCCGCAACTTTTTGCTGCGGGACGGCTATGACCGGGTGCAGCTCTCGGTCTATGCCCGCGTTTGCCGGGGCCCGGAAAATGTGGAGACCCATATCCGGCGGCTGCAAAAGAACCTGCCGCCGCACGGCTGTGTGCGCCTGCTGCAGGTGACGGAAAAACAGTACGGCCGCATGAGATTGCTGGTGGGGGACATGCCGGTCATGGAAAAGGAGGCGGCCACGCAATTGCTGCTTTTCTAAAAAGTGCTGCCATACAACGCCCCATACGGAAAAACCTTGTGCTCTTACCGGAAAAAAACACTGTTTTCTCCAGTAAAAACACAAGGTTTTCCATTTTCC # Right flank : CACGCCAGACGCCTACAGCCGCGCACAGACCCGTATGAGCGTTTTTTGGCGGGGAGGATGGGGGCACGGGGGAAGGAGGGGGCCCTTTTTTCCGCAAGAAAAAGGGTCCCCTCCTTCCCCCGTCTTCCCCCTGCCCCGACCCTCTAGCCTTCCAGGCTCCAGCCCTGGCCCAGTTTGAGCTGTTCCCCGCCCAGGGCCTGCATGAGCGCGGGATCATGGGTGGAACAGACGATGGCCGCGCCTTCGGCCCGGCACCGGGCCACGGCGGCGGCGATGGCGCGGGCGCTGCGCACGTCCACGTTGGAGGTGGGCTCGTCCAGCAGCAGGGCGCGCGGACGCAGCACCAGGCGCGAGGCCAGGGCCACGCGCTGGCGTTCCCCGCCGGAAAGGGCGTTGGGCCCGCGGCGGCGCATGGCATCGGGATCATCGAAGCCCACCTGCCGCATGGCGGCCTGATAGGCGTCCTCCAGACCGTCCCGACGGCCGCGCAGCTTCAGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //