Array 1 142877-140186 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRA01000016.1 Bifidobacterium longum subsp. longum strain MCC10050 contig0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 142876 36 100.0 28 .................................... TGCGAGGGCATATCGGCATTGCCAACGA 142812 36 100.0 29 .................................... TTTCGGTTGATGACGTATGGTGACTGATA 142747 36 100.0 28 .................................... TTGCTGGACAGTTCGCCGTGCATAATCG 142683 36 100.0 49 .................................... GTGGCCGAGGGCATACGCCTCGCTCATGTCGGGTTGTACCGGAGCACCG 142598 36 100.0 28 .................................... GTGGCCGAGGGCATACGCCTCTGATATT 142534 36 100.0 29 .................................... GCGTCACCAGTGAAGGGGTTGTATCCTTT 142469 36 100.0 28 .................................... ACCGGTATGCCTTGTGACGTGGTGAAGT 142405 36 100.0 28 .................................... GTGTCCTGCAACGCCCACGCGAGGTAAC 142341 36 100.0 28 .................................... AAAATCGCCGACGCGTTCGACGTGTCGC 142277 36 100.0 28 .................................... ACGGTCATGGTGTCAAGCCCCGTGGCCT 142213 36 100.0 28 .................................... CACTGATTGATGATTGGCTGATTGATGA 142149 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 142085 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 142021 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 141956 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 141891 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 141827 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 141763 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 141698 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 141634 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 141570 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 141506 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 141442 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 141378 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 141314 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 141250 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 141185 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 141121 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 141057 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 140993 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 140928 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 140863 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 140799 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 140734 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 140670 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 140606 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 140541 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 140477 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 140413 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 140349 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 140285 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 140221 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ================================================= ================== 42 36 99.7 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //