Array 1 29183-30693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUF010000001.1 Riemerella anatipestifer strain 20190401E1-1 NODE_1_length_673790_cov_249.069877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 29183 47 100.0 30 ............................................... CCCCTCCCCCAGCTTCTCCCGGAAGCGCAG 29260 47 100.0 31 ............................................... CTGCCGTAATGCCTAAGCCTTTATGATTGAT 29338 47 100.0 30 ............................................... CAAAATGAAACTCTTTTAGAAGTATCTTGG 29415 47 100.0 30 ............................................... CAGACTGTCACTGCCCTGTGGTGAGAGATT 29492 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29569 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29646 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29723 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29800 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29877 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29954 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 30031 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 30108 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 30185 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30262 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30339 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30416 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30493 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30570 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30647 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 1614-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUF010000004.1 Riemerella anatipestifer strain 20190401E1-1 NODE_4_length_156974_cov_248.947991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 1613 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 1547 36 97.2 30 ................G................... AATTTGGTAAGGTAGAATGTCTTAAAATTA 1481 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 1415 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 1349 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 1283 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 1217 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 1151 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 1085 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 1019 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 953 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 887 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 771 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [760,767] 654 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [637,650] 536 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [519,532] 418 35 83.3 82 ...C...A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA G,T [407,414] 299 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [282,295] 183 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [165,167,179] 66 35 83.3 0 ...C...A...G-.A.............C....... | A,T [49,62] ========== ====== ====== ====== ==================================== ================================================================================== ================== 19 36 93.1 50 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : CATTTCCTATACTTTCTTGCATTGCTGTTG # Questionable array : NO Score: 3.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : GTTGGGACTGCTCTCATTTTGAAGGGTATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //